As title says, everything is compiled -O2 -fno-strength-reduce -fno-strict-aliasing instead of users ones.
Please post your `emerge --info' too.
It doesn't change anything at the fact. I took a closer look but can't figure where the CFLAGS are defined.(In reply to comment #1) > Please post your `emerge --info' too. > It doesn't change anything at the fact. :) I took a closer look but can't figure where the CFLAGS are defined. After src_unpack just one Makefile is in the WORKDIR with set DEBUGC(XX)FLAGS which corespond to the used ones. If you change them via sed, confirmed the it works, it still uses its own. There are alot of Imakefiles but the all doesn't contain definitions of C(XX)FLAGS. While this mysterious bash script is running the neccesary Makefiles are created with the known CFLAGS. I don't understand where it gets it from, but in all newly produced Makefile there are thsi -O2 -fno-strength-reduce... . I will help to fix it, if you give me a hint where to look. Portage 2.2_rc13 (default/linux/x86/2008.0, gcc-4.2.4, glibc-2.6.1-r0, 2.6.25-gentoo-r8 i686) ================================================================= System uname: Linux-2.6.25-gentoo-r8-i686-Intel-R-_Pentium-R-_D_CPU_2.80GHz-with-glibc2.0 Timestamp of tree: Mon, 03 Nov 2008 15:30:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 3.2_p33 dev-java/java-config: 1.3.7, 2.1.6 dev-lang/python: 2.5.2-r8 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 2.0.0 sys-apps/openrc: 0.3.0-r1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r2 sys-devel/automake: 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1-r1 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="x86" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" ANT_HOME="/usr/share/ant-core" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ARCH="x86" AUTOCLEAN="yes" BINSORT_SCR="/tmp/justin" BINTYPE="linux9" CBIN="/usr/bin" CBUILD="i686-pc-linux-gnu" CCACHE_DIR="/home/ccache" CCACHE_SIZE="3G" CCP4="/usr" CCP4I_HELP="/usr/lib/ccp4/ccp4i/help" CCP4I_TCLTK="/usr/bin" CCP4I_TOP="/usr/lib/ccp4/ccp4i" CCP4_BIN="/usr/bin" CCP4_BROWSER="mozilla" CCP4_HELPDIR="/usr/help/" CCP4_LIB="/usr/lib" CCP4_MASTER="/usr" CCP4_OPEN="UNKNOWN" CCP4_SCR="/tmp/justin" CDOC="/usr/doc" CETC="/usr/etc" CEXAM="/usr/examples" CFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CHTML="/usr/html" CINCL="/usr/share/ccp4/include" CLASSPATH="/usr/bin:." CLEAN_DELAY="5" CLIB="/usr/lib" CLIBD="/usr/share/ccp4/data" CLIBD_MON="/share/ccp4/data/monomers/" CLIBS="/usr/lib/src" CNS_CONFDB="/usr/share/cns/libraries/confdb" CNS_DATA="/usr/share/cns" CNS_DOC="/usr/share/doc/cns-1.2.1" CNS_HELPLIB="/usr/share/cns/helplib" CNS_LIB="/usr/share/cns/libraries" CNS_MODULE="/usr/share/cns/modules" CNS_NMRLIB="/usr/share/cns/libraries/nmr" CNS_NMRMODULE="/usr/share/cns/modules/nmr" CNS_ROOT="/usr" CNS_SOLVE="/usr" CNS_TOPPAR="/usr/share/cns/libraries/toppar" CNS_XRAYLIB="/usr/share/cns/libraries/xray" CNS_XTALLIB="/usr/share/cns/libraries/xtal" CNS_XTALMODULE="/usr/share/cns/modules/xtal" COLLISION_IGNORE="/lib/modules" COLORFGBG="7;default;0" COLORTERM="rxvt-xpm" CONFIG_PROTECT="/etc /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" COOT_REFMAC_LIB_DIR="/usr/share/coot/lib" CPROG="/usr/src" CRANK="/usr/ccp4i/crank" CVS_RSH="ssh" CXXFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" DBUS_SESSION_BUS_ADDRESS="unix:abstract=/tmp/dbus-yOuY9QiAB7,guid=7697b790d8729f3f9b45401f490ee2ca" DESKTOP_SESSION="gnome" DISPLAY=":0.0" DISTDIR="/usr/portage/distfiles" DYLD_LIBRARY_PATH="/usr/lib:/usr/lib" DYNAMO_DIR="${NMRBASE}/dynamo" DYNAMO_KEY="2002084" DYNAMO_PARAMS="${DYNAMO_DIR}/params" ECHANGELOG_USER="justin Lecher <justin@j-schmitz.net>" EDITOR="/bin/nano" ELIBC="glibc" EMERGE_DEFAULT_OPTS="-t --verbose --jobs=3 --load-average=3 --keep-going" EMERGE_WARNING_DELAY="10" F77="gfortran" FCFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" FEATURES="ccache distlocks notitles parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans userfetch" FETCHCOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}" FFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" GCC_SPECS="" GDK_USE_XFT="1" GDMSESSION="gnome" GDM_LANG="en_GB.UTF-8" GDM_XSERVER_LOCATION="local" GENERATION="2" GENTOO_MIRRORS="http://gentoo.j-schmitz.net/mirror/ ftp://ftp.gentoo.mesh-solutions.com/gentoo/ ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo ftp://ftp.tu-clausthal.de/pub/linux/gentoo/ http://mirror.switch.ch/ftp/mirror/gentoo/" GKLIB="/opt/usf-lib/" GNOME_DESKTOP_SESSION_ID="Default" GNOME_KEYRING_SOCKET="/tmp/keyring-cLTAyg/socket" GPG_AGENT_INFO="/tmp/gpg-plvyrA/S.gpg-agent:19054:1" GTK_RC_FILES="/etc/gtk/gtkrc:/home/justin/.gtkrc-1.2-gnome2" GUILE_LOAD_PATH="/usr/share/guile/1.8" HELPDIR="/usr/help/" HISTCONTROL="ignoredups" HISTFILESIZE="1000" HISTIGNORE="fg:bg" HISTSIZE="1000" HOME="/home/justin" INFOPATH="/usr/share/info:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/info:/usr/share/gcc-data/i686-pc-linux-gnu/4.2.4/info" INPUT_DEVICES="keyboard mouse" INTEL_BATCH="1" JAVAC="/home/justin/.gentoo/java-config-2/current-user-vm/bin/javac" JAVA_HOME="/home/justin/.gentoo/java-config-2/current-user-vm" JDK_HOME="/home/justin/.gentoo/java-config-2/current-user-vm" KERNEL="linux" LANG="en_GB.UTF-8" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LC_CTYPE="en_GB.UTF-8" LDFLAGS="-Wl,-O1,--hash-style=gnu,--sort-common" LDPATH="/usr/local/lib:/usr/lib/opengl/xorg-x11/lib:/usr/i686-pc-linux-gnu/lib:/usr/lib/gcc/i686-pc-linux-gnu/4.2.4:/usr/lib/gcc/i686-pc-linux-gnu/4.3.2:/usr/lib/gcc/i686-pc-linux-gnu/4.1.2:/opt/intel/cc/10.1.018/lib:/opt/intel/fc/10.0.026/lib:/usr/lib/nspr:/usr/lib/nss:/opt/sun-jdk-1.4.2.18/jre/lib/i386/:/opt/sun-jdk-1.4.2.18/jre/lib/i386/native_threads/:/opt/sun-jdk-1.4.2.18/jre/lib/i386/classic/:/opt/sun-jdk-1.4.2.18/jre/lib/i386/server/:/usr/lib/qt4:/usr/games/lib:/usr/lib/libstdc++-v3/" LD_LIBRARY_PATH="/usr/lib:/usr/lib" LESS="-R -M --shift 5" LESSOPEN="|lesspipe.sh %s" LINGUAS="de en_GB en_US" LOGNAME="justin" LS_COLORS="no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.svgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:" MAKEOPTS="-j3 -l3" MANPATH="/home/justin/.gentoo/java-config-2/current-user-vm/man:/usr/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/man:/usr/share/gcc-data/i686-pc-linux-gnu/4.2.4/man:/opt/intel/cc/10.1.018/man:/opt/intel/fc/10.0.026/man:/opt/sun-jdk-1.4.2.18/man:/etc/java-config/system-vm/man/:${NMRBASE}/man" MCTYPE="unix" MMCIFDIC="/usr/lib/cif_mmdic.lib" MOLREPLIB="/share/ccp4/data/monomers/" MOSHELPFILE="mosflm" MP_SET_NUMTHREADS="1" NMRBASE="/opt/nmrpipe" NMRTXT="${NMRBASE}/nmrtxt" NOCOLOR="true" OLDPWD="/home/justin" OMP_NUM_THREADS="2" OPENGL_PROFILE="xorg-x11" PAGER="/usr/bin/less" PATH="/usr/lib/ccp4/ccp4i/bin:/usr/etc:/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.2.4:/opt/intel/cc/10.1.018/bin:/opt/intel/fc/10.0.026/bin:/opt/cara/:/opt/sun-jdk-1.4.2.18/bin:/opt/sun-jdk-1.4.2.18/jre/bin:/opt/sun-jdk-1.4.2.18/jre/javaws:/opt/usf-dejavu-bin/:/opt/usf-rave-bin/:/opt/usf-voidoo-bin/:/opt/usf-xutil-bin/:${PATH}:${DYNAMO_DIR}/tcl:/usr/games/bin:/data/scripts" PDBH_BASE="${NMRBASE}/pdb" PDBH_DIR="${PDBH_BASE}/pdbH" PDBH_LIST="${PDBH_BASE}/pdbH.list" PDBH_TAB="${PDBH_BASE}/resolution.tab" PKGDIR="/usr/portage/packages" PLOT_COMMAND="lp -s -dmicrolaser" PORTAGE_ARCHLIST="ppc s390 amd64 x86 ppc64 x86-fbsd m68k arm sparc sh mips ia64 alpha hppa sparc-fbsd" PORTAGE_BINHOST_CHUNKSIZE="3000" PORTAGE_BIN_PATH="/usr/lib/portage/bin" PORTAGE_COMPRESS="lzma" PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png" PORTAGE_COMPRESS_FLAGS="-z -9 -f -S .lzma -v" PORTAGE_CONFIGROOT="/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" PORTAGE_ECLASS_WARNING_ENABLE="0" PORTAGE_ELOG_CLASSES="info warn error log * qa" PORTAGE_ELOG_MAILFROM="portage@localhost" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="root" PORTAGE_ELOG_SYSTEM="save echo" PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" PORTAGE_FETCH_RESUME_MIN_SIZE="350K" PORTAGE_GID="250" PORTAGE_INST_GID="0" PORTAGE_INST_UID="0" PORTAGE_PYM_PATH="/usr/lib/portage/pym" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_RSYNC_RETRIES="3" PORTAGE_TMPDIR="/var/tmp" PORTAGE_VERBOSE="1" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/dberkholz /usr/portage/local/layman/science /usr/portage/local/private-overlay-dev/ebuilds /usr/portage/local/molmod/trunk /usr/portage/local/molmod/branches" PRINT_COMMAND="lp -s -denscript" PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND" PUBLIC_FONT84="/usr/lib/font84.dat" PWD="/mnt/tmpfs" PYMOL_DATA="/usr/share/pymol/data" PYMOL_PATH="/usr/lib/python2.5/site-packages/pymol" PYMOL_SCRIPTS="/usr/share/pymol/scripts" RASMOLPATH="/usr/x-windows/RasMol/src" RCSBROOT="/usr/lib/rcsb" RESUMECOMMAND="/usr/bin/axel -a -o ${DISTDIR}/${FILE} ${URI}" ROOT="/" ROOTPATH="/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.2.4:/opt/intel/cc/10.1.018/bin:/opt/intel/fc/10.0.026/bin:/opt/sun-jdk-1.4.2.18/bin:/opt/sun-jdk-1.4.2.18/jre/bin:/opt/sun-jdk-1.4.2.18/jre/javaws:/data/scripts" RPMDIR="/usr/portage/rpm" SESSION_MANAGER="local/kancheli:/tmp/.ICE-unix/8055" SGML_CATALOG_FILES="/etc/sgml/openjade-1.3.2.cat:/etc/sgml/xml-docbook-4.4.cat:/etc/sgml/xml-docbook-4.1.2.cat:/etc/sgml/sgml-docbook.cat:/etc/sgml/sgml-lite.cat:/etc/sgml/sgml-ent.cat:/etc/sgml/dsssl-docbook-stylesheets.cat:/etc/sgml/sgml-docbook-3.1.cat" SHELL="/bin/bash" SHLVL="1" SSH_AGENT_PID="19028" SSH_ASKPASS="/usr/bin/gtk2-ssh-askpass" SSH_AUTH_SOCK="/tmp/ssh-STNou19027/agent.19027" SURF_DIR="${DYNAMO_DIR}/surface" SYNC="rsync://rsync.j-schmitz.net/gentoo-portage" TERM="rxvt-unicode" TRAP_FPE="OVERFL=ABORT; DIVZERO=ABORT; INVALID=ABORT" USE="7zip X acpi additions alsa bash-completion berkdb branding bzip2 ccache cli command-args cracklib crypt cups cupsddk custom-optimization dri dts fbcondecor fortran gdbm gif glibc-omitfp gnome gpm graphics gtk hddtemp iconv isdnlog java javascript jpeg kdeenablefinal lapack lcms libnotify lm_sensors mailtrain md5sum midi mmx mp3 mpi mudflap multiuser nagios-dns nagios-ntp nagios-ping nagios-ssh nano-syntax ncurses nis nls nptl nptlonly nsplugin objc objc++ opengl openmp openntpd oss pam pcre pdf perl png pppd pymol python qt-static qt3support readline reflection replytolist restrict-javascript rrdcgi rrdtool science sensord session smp spl sqlite sqlite3 sse sse2 ssl swat symlink sysfs tcpd threads tiff truetype type1 unicode x86 xcomposite xorg xulrunner zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de en_GB en_US" USERLAND="GNU" VIDEO_CARDS="intel" USER="justin" USERLAND="GNU" USERNAME="justin" USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS USERLAND VIDEO_CARDS" USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" VIDEO_CARDS="intel" VMHANDLE="sun-jdk-1.4" WINDOWID="46137373" WINDOWPATH="7:7:7" WINEPREFIX="/home/justin/.wine" XAUTHORITY="/home/justin/.Xauthority" XCURSORS_THEME="Jimmac" XDG_DATA_DIRS="/usr/local/share/:/usr/share/:/usr/share/gdm/" XSESSION="Gnome" XUSERFILESEARCHPATH="/usr/lib/X11/app-defaults/%N:/usr/lib/X11/app-defaults/%N:/usr/lib/X11/app-defaults" _="/usr/bin/emerge" _POSIX2_VERSION="199209"
I probably found solution, takes me some days.
# Samuli Suominen <drac@gentoo.org> (02 Dec 2008) # Masked by treecleaners for bugs 88334, 244190, 245408 and 245409. # Removed in ~60 days. x11-libs/xview sci-chemistry/nmrpipe
Removed from tree.
