'emerge paraview' fails with: ... [ 24%] Building CXX object Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfDataDesc.o /var/tmp/portage/sci-visualization/paraview-3.3_pre20080514/work/ParaView3/Utilities/Xdmf2/libsrc/XdmfDataDesc.cxx: In member function 'XdmfInt32 XdmfDataDesc::SelectCoordinates(XdmfInt64, XdmfInt64*)': /var/tmp/portage/sci-visualization/paraview-3.3_pre20080514/work/ParaView3/Utilities/Xdmf2/libsrc/XdmfDataDesc.cxx:353: error: cannot convert 'const hsize_t**' to 'const hsize_t*' for argument '4' to 'herr_t H5Sselect_elements(hid_t, H5S_seloper_t, size_t, const hsize_t*)' make[2]: *** [Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfDataDesc.o] Error 1 Reproducible: Always root@deer:/root(160)# emerge --info Portage 2.2_rc12 (default/linux/amd64/2008.0, gcc-4.3.2, glibc-2.8_p20080602-r0, 2.6.26-gentoo-r2 x86_64) ================================================================= System uname: Linux-2.6.26-gentoo-r2-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q9550_@_2.83GHz-with-glibc2.2.5 Timestamp of tree: Wed, 15 Oct 2008 09:00:01 +0000 app-shells/bash: 3.2_p39 dev-java/java-config: 1.3.7, 2.1.6-r1 dev-lang/python: 2.4.4-r13, 2.5.2-r8 dev-python/pycrypto: 2.0.1-r6 dev-util/cmake: 2.6.2 sys-apps/baselayout: 2.0.0 sys-apps/openrc: 0.3.0-r1 sys-apps/sandbox: 1.2.18.1-r3 sys-devel/autoconf: 2.13, 2.63 sys-devel/automake: 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1-r1 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.26 ACCEPT_KEYWORDS="amd64 ~amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=nocona -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /et c/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rul es.d" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks fixpackages parallel-fetch preserve-libs protect-owned sandbox sfperms strict unmerge-orphans userfetch" FFLAGS="-march=nocona -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LDFLAGS="-Wl,-O1" LINGUAS="de fr" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles -- exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/science /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X Xaw3d a52 aac acl acpi administrator afs aiglx alsa amd64 amrr ao aotuv apache2 asf atlas auctex audacious audiofile automount bash-completion beagl e berkdb bjam blas bluetooth bonobo boo boost bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cli corba cracklib cran crypt cups curl cxx daap db us device-mapper dga dia divx djvu dlloader dmi dri ds3490 dv dvb dvd dvdr dvi dxr3 dynagraph eds effects elf emacs emboss encode epiphany esd evo examples exif expat extra fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx galago gd gdal gdbm geos gif gimp gimpprint ginac glade glitz gml gmp gnokii gnome gnuplot gnutls gphoto2 gpm graphics graphviz gs gsl gsm gstreamer gtk guile hal hardened hddtemp hdf hdf5 hlapi http hvm iconv icq icu id3 ima gemagick imap innodb ipv6 irda irmc isdnlog ithreads jabber java jbig john jpeg jpeg2k kerberos kexi keyring ladspa lame lapack latex lcms ldap libffi libg da libsamplerate lirc lm_sensors lua lzo lzw mad maildir math matroska midi mmx mmxext mng mod mono motif mozdevelop mozilla mozsvg mozxmlterm mp3 mp4 mp4l ive mpeg mpeg2 mplayer mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networkmanager nfs nls nntp nptl nptlonly nspl ugin ntfs numarray numeric nvidia obex ocaml octave odbc ogdi ogg ole opengl openmp pae pam pcre pda pdf perl plotutils plugins png posix postgres postscri pt pppd preview-latex proj projectx pstricks python qhull quicktime readline reflection reiserfs rhythmbox rle rpc rrdcgi rrdtool samba sasl science sdl se ssion slang slp smp sndfile snmp soup sox speex spell spl sqlite sse sse2 ssl stlport subtitles subversion suexec svg sysfs t1lib tcl tcpd tex theora threa ds thunderbird tidy tiff tk truetype unicode userlocales utempter v4l2 vorbis wmf wxwindows xattr xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloa t linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd aut hn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate d ir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy pro xy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="key board mouse " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" USERLAND="GN U" VIDEO_CARDS="nv nvidia vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 168564 [details] /var/tmp/portage/sci-visualization/paraview-3.3_pre20080514/temp/build.log
*** Bug 242182 has been marked as a duplicate of this bug. ***
Hi Juergen, This looks like an issue with hdf5. Which version of hdf5 do you have installed? Thanks, Markus
Hi Markus, it is hdf5-1.6.7. Regards Juergen
Hi Juergen, I believe I just fixed this. Please re-open the bug if the problem persists. Thanks, Markus
