The sci-biology/embassy metapackage just updated from 5.0.0 to 6.0.1, with some updates to its dependencies; it would appear that when the embassy-mse ebuild was updated, some problems arose: $ sudo emerge embassy Calculating dependencies... done! >>> Verifying ebuild Manifests... !!! Digest verification failed: !!! /usr/portage/sci-biology/embassy-mse/embassy-mse-1.0.0-r4.ebuild !!! Reason: Filesize does not match recorded size !!! Got: 732 !!! Expected: 738 Note that the 1.0.0-r4 ebuild is not the most recent one present; there's also a 1.0.0-r6 ebuild, and they both have identical KEYWORDS. So 1.0.0-r4 isn't going to install anyway; it just needs to hash check so emerge will stop complaining. I could rehash myself, but that would only help me; reporting it here makes sure it's fixed for everyone.
Hmm, apparently the problem is (slightly) larger than I had previously realized. In particular, it looks like the 1.0.0-r6 ebuild is also improperly digested; when attempting to compile, I got the following errors: >>> Emerging (5 of 19) sci-biology/embassy-mse-1.0.0-r6 to / !!! Previously fetched file: 'EMBOSS-6.0.1.tar.gz' !!! Reason: Filesize does not match recorded size !!! Got: 20204153 !!! Expected: 200160 Refetching... File renamed to '/usr/portage/distfiles/EMBOSS-6.0.1.tar.gz._checksum_failure_.WrPIoi' >>> Downloading 'http://open-systems.ufl.edu/mirrors/gentoo/distfiles/EMBOSS-6.0.1.tar.gz' --2008-08-28 00:11:38-- http://open-systems.ufl.edu/mirrors/gentoo/distfiles/EMBOSS-6.0.1.tar.gz Resolving open-systems.ufl.edu... 128.227.74.67 Connecting to open-systems.ufl.edu|128.227.74.67|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 20204153 (19M) [application/x-tar] Saving to: `/usr/portage/distfiles/EMBOSS-6.0.1.tar.gz' 100%[===============================================>] 20,204,153 60.3K/s in 8m 31s 2008-08-28 00:20:10 (38.6 KB/s) - `/usr/portage/distfiles/EMBOSS-6.0.1.tar.gz' saved [20204153/20204153] >>> Downloading 'http://open-systems.ufl.edu/mirrors/gentoo/distfiles/embassy-6.0.1-mse-1.0.0.tar.gz' --2008-08-28 00:20:10-- http://open-systems.ufl.edu/mirrors/gentoo/distfiles/embassy-6.0.1-mse-1.0.0.tar.gz Resolving open-systems.ufl.edu... 128.227.74.67 Connecting to open-systems.ufl.edu|128.227.74.67|:80... connected. HTTP request sent, awaiting response... 404 Not Found 2008-08-28 00:20:11 ERROR 404: Not Found. >>> Downloading 'http://www.gtlib.gatech.edu/pub/gentoo/distfiles/embassy-6.0.1-mse-1.0.0.tar.gz' --2008-08-28 00:20:11-- http://www.gtlib.gatech.edu/pub/gentoo/distfiles/embassy-6.0.1-mse-1.0.0.tar.gz Resolving www.gtlib.gatech.edu... 128.61.111.10, 128.61.111.11, 128.61.111.9, ... Connecting to www.gtlib.gatech.edu|128.61.111.10|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 445562 (435K) [application/x-gzip] Saving to: `/usr/portage/distfiles/embassy-6.0.1-mse-1.0.0.tar.gz' 100%[===============================================>] 445,562 61.8K/s in 7.9s 2008-08-28 00:20:20 (55.4 KB/s) - `/usr/portage/distfiles/embassy-6.0.1-mse-1.0.0.tar.gz' saved [445562/445562] * checking ebuild checksums ;-) ... [ ok ] * checking auxfile checksums ;-) ... [ ok ] * checking miscfile checksums ;-) ... [ ok ] * checking EMBOSS-6.0.1.tar.gz ;-) ... [ !! ] !!! Digest verification failed: !!! /usr/portage/distfiles/EMBOSS-6.0.1.tar.gz !!! Reason: Filesize does not match recorded size !!! Got: 20204153 !!! Expected: 200160 * GNU info directory index is up-to-date. Because this came after compiling four other packages which presumably all depended on EMBOSS-6.0.1.tar.gz (the "5 of 19" mentioned above are solely the results of "emerge embassy"), none of which had any problems, I'm beginning to suspect this entire package was misdigested. (Yes, the new copy it downloaded is identical to the previous copy which it moved to a checksum_failure file.)
Please post your `emerge --info' too.
Only embassy-mse-1.0.0-r4.ebuild appears to be a problem: Index: Manifest =================================================================== RCS file: /var/cvsroot/gentoo-x86/sci-biology/embassy-mse/Manifest,v retrieving revision 1.38 diff -u -B -r1.38 Manifest --- Manifest 27 Aug 2008 21:49:47 -0000 1.38 +++ Manifest 28 Aug 2008 07:40:14 -0000 @@ -3,7 +3,7 @@ DIST embassy-4.0.0-mse-1.0.0.tar.gz 428940 RMD160 9f4d85aed5b27ecb6e6b5f814c46fe5edfc6c66c SHA1 5d29f4054a2985cd28a01d77c925be7368cdbc02 SHA256 9168315bcfb1a658f298891204b8b31f8faa7986e24eb513283c15cf61f8a01a DIST embassy-6.0.1-mse-1.0.0.tar.gz 445562 RMD160 c982e2107842521ec0c84198ee1f1dc7193b53d8 SHA1 85ab910a49252cbef6811296597cca226ccf9002 SHA256 9e3688ff3514b7ea6cf104fbd2a2e611fe726fb7ac4bebab6f3c103f05c08d90 EBUILD embassy-mse-1.0.0-r3.ebuild 582 RMD160 c5447ef4d9886fcff90c8a7ba5e9bf7f8f0e8f00 SHA1 2a1edecd376928053658863eeb05cd37fce1a8a1 SHA256 b53ae6dfbf1aef00dfa98174e294e214ffa4b01a4f7c4f0a586429978bde83ca -EBUILD embassy-mse-1.0.0-r4.ebuild 738 RMD160 eacbbfc155a1c102a27fe7b8c3784a741746afe6 SHA1 eb2277c2290ea958a3c71434db929aaa34da6759 SHA256 bd5d95b9545081cb1e071a9cef8c3f5b6ecb4a7a64bea9fe41fca0691187aa64 +EBUILD embassy-mse-1.0.0-r4.ebuild 732 RMD160 2e124937b919d51081b56495af60c9ed72c33da1 SHA1 59d205afd3be00ec4c7468e4b7a78895d0b9fd1f SHA256 437c81ca9702e4146d6a630573174da84ec880dfb234419d3e1424723485b5a5 EBUILD embassy-mse-1.0.0-r6.ebuild 593 RMD160 937eae559dccc7a998bf314e32511c21624faf0c SHA1 b321e343ee8296cdf929021879065783e3fdf097 SHA256 6176d24064c6b6fba9786ffa5d9f4310f50cd1559c12f261bdbb50fe17256b51 MISC ChangeLog 4459 RMD160 69968adbec4b74cab66341486eca7f51282831fd SHA1 9a3d1e7fdf4af4bdd3914e8d0c5d623cd635f490 SHA256 3523cd861d55c2263c222912a6f1097fced2058f586cded4cfad8dd3d2b0c66a MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
(In reply to comment #2) > Please post your `emerge --info' too. > Sure, it can't hurt: Portage 2.1.4.4 (default/linux/amd64/2008.0/desktop, gcc-4.1.2, glibc-2.8_p20080602-r0, 2.6.25-protect-r7 x86_64) ================================================================= System uname: 2.6.25-protect-r7 x86_64 Intel(R) Core(TM)2 Duo CPU T7300 @ 2.00GHz Timestamp of tree: Thu, 28 Aug 2008 03:23:02 +0000 distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] ccache version 2.4 [enabled] app-shells/bash: 3.2_p33 dev-java/java-config: 1.3.7, 2.1.6 dev-lang/python: 2.5.2-r6 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r2 sys-devel/automake: 1.4_p6, 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=nocona -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=nocona -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="ccache distlocks metadata-transfer sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://open-systems.ufl.edu/mirrors/gentoo http://www.gtlib.gatech.edu/pub/gentoo ftp://ftp.gtlib.gatech.edu/pub/gentoo http://distro.ibiblio.org/pub/linux/distributions/gentoo/ ftp://distro.ibiblio.org/pub/linux/distributions/gentoo/ http://gentoo.osuosl.org/ " LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1" LINGUAS="en_US en ja" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/sunrise /usr/portage/local/layman/roslin /usr/portage/local/layman/desktop-effects /usr/local/portage" SYNC="rsync://rsync21.us.gentoo.org/gentoo-portage" USE="64bit 7zip X a52 aac aalib acl acpi aim alsa amd64 animgif anthy applet audacious bash-completion berkdb bittorrent bluetooth branding bzip2 cairo cdaudio cdda cddb cdparanoia cdr cjk cli console cpudetection cracklib crypt css cups dbus dict directfb divx djvu dri dvd dvdnav dvdr dvdread dvi eds emboss encode esd exif fam fat fbcon fbsplash ffmpeg firefox flac fortran ftp gdbm gif gimp gimpprint glitz glsa gmail gnome gpm gs gstreamer gtk hal hdaps hddtemp hfs ibmacpi iconv icq icu idea ieee1394 imagemagick ipv6 ipw4965 isdnlog jabber java javascript jingle john jpeg kerberos lame latex ldap libcaca libnotify lm_sensors lua mad matroska md5sum midi mikmod mmx mng mono mp3 mpeg mplayer msn mtp mudflap multilib mysql ncurses nethack nls nptlonly nsplugin ntfs offensive ogg opengl openmp openssl opensslcrypt openvpn pam pcmcia pcre pdf perl pidgin png pop ppds pppd prediction python qt3support quicktime rar raw readline realmedia reflection reiserfs sdl server session spell spl sse sse2 ssl svg sysfs tcpd theora thunderbird tiff timidity tracker truetype uim unicode usb vim-syntax vim-with-x visualization vorbis wav wifi wma wmp wordperfect wxwindows x264 xcomposite xml xorg xscreensaver xulrunner xvid yahoo zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en_US en ja" USERLAND="GNU" VIDEO_CARDS="vesa vga i810 intel" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS But yea, while perhaps it's inaccurate to say that the 1.0.0-r6 ebuild is failing digest verification, it does look like the Manifest has more than one mistake; the DIST EMBOSS-6.0.1.tar.gz line also seems to be wrong. I mean, when the received file size is 100 times larger than the expected file size, it's possible the Manifest was built against a different version of the sources.
Fixed in CVS. Thanks for reporting.
