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Bug 222727 - sci-biology/bioperl-1.5.1-r1: stabilization request for amd64 and x86
Summary: sci-biology/bioperl-1.5.1-r1: stabilization request for amd64 and x86
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High normal
Assignee: Olivier Fisette (RETIRED)
URL:
Whiteboard:
Keywords: STABLEREQ
Depends on: 222725
Blocks:
  Show dependency tree
 
Reported: 2008-05-18 21:34 UTC by Martin Mokrejš
Modified: 2008-07-15 14:25 UTC (History)
0 users

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Package list:
Runtime testing required: ---

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Description Martin Mokrejš 2008-05-18 21:34:00 UTC 
Please stabilize after stabilizing sci-libs/io_lib-1.8.12b (bug #222725).
Comment 1 Carsten Lohrke (RETIRED) gentoo-dev 2008-05-18 23:05:18 UTC 
Maintainer's voice...
Comment 2 Olivier Fisette (RETIRED) gentoo-dev 2008-07-06 21:11:16 UTC 
Stable on amd64.

x86: This is ready to be stabilised. The ebuild supports Bioperl's test suite. A few tests are expected to fail:

Failed Test       Stat Wstat Total Fail  List of Failed
-------------------------------------------------------------------------------
t/Biblio_eutils.t                5    1  6
t/BioFetch_DB.t                 27    2  8 27
t/DB.t                          84    1  24
t/EMBL_DB.t                     15    1  6
t/OntologyStore.t                6    4  3-6
t/SeqHound_DB.t                 15    1  1
t/chaosxml.t                    ??   ??  ??

These involve network/database access and storage, which is not available unless you take the time to configure it, and not used by the vast majority of users. (Chaosxml tests are broken.)
Comment 3 Raúl Porcel (RETIRED) gentoo-dev 2008-07-15 14:25:55 UTC 
x86 stable and closing