the line: setenv CINCL $CCP4$CCP4/share/ccp4/include in /etc/profile.d/ccp4.setup.sh is wrong. should be: setenv CINCL $CCP4/share/ccp4/include Reproducible: Always Steps to Reproduce: run any CCP4 program in ebuild 6.0.2-r1 Actual Results: $ areaimol >>>>>> CCP4 library signal ccp4_general:Cannot open environ.def (Success) raised in ccp4fyp <<<<<< areaimol: Cannot open environ.def areaimol: Cannot open environ.def Times: User: 0.0s System: 0.0s Elapsed: 0:00 Expected Results: $ ncont ############################################################### ############################################################### ############################################################### ### CCP4 6.0: NCONT version 6.0 : ## ############################################################### User: marcin_cieslik Run date: 13/ 4/2008 Run time: 00:49:31 Please reference: Collaborative Computational Project, Number 4. 1994. "The CCP4 Suite: Programs for Protein Crystallography". Acta Cryst. D50, 760-763. as well as any specific reference in the program write-up. ------------------------------------------------------------------------------ ***** ERROR #40 READ: Logical file name not found.
Huh. Wonder how that slipped in. The stuff I run through ccp4i worked fine. I guess I'll collect a couple other things and make another revbump, since this seems like it could be pretty annoying for a lot of people.
Created attachment 183315 [details, diff] Fixes to the setenv sed Just to make sure it isn't missed, CLIBD has the same problem as CINCL. I attach a patch to the ebuild, which may or may not be the preferred way of fixing the issue.
Thanks for that, I will fix it directly in the new package. Poke donnie for the tree ebuild.
I pushed version 6.1.3 to the tree. It should be fixed there
