configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/math/Makefile config.status: creating src/formats/Makefile config.status: creating src/fingerprints/Makefile config.status: creating src/formats/xml/Makefile config.status: creating src/formats/inchi/Makefile config.status: creating src/forcefields/Makefile config.status: creating src/GUI/Makefile config.status: creating src/descriptors/Makefile config.status: creating src/ops/Makefile config.status: creating include/Makefile config.status: creating include/openbabel/Makefile config.status: creating include/openbabel/math/Makefile config.status: creating test/Makefile config.status: creating test/cmltest/Makefile config.status: creating tools/Makefile config.status: creating doc/Makefile config.status: creating scripts/Makefile config.status: creating openbabel-2.0.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing include/openbabel/babelconfig.h commands Makefile:156: *** missing separator. Stop. * * ERROR: sci-chemistry/openbabel-2.2.0_beta4 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 133: Called die * The specific snippet of code: * emake || die "emake failed"; * The die message: * emake failed Reproducible: Always Steps to Reproduce: 1. emerge -1 =sci-chemistry/openbabel-2.2.0_beta4 Portage 2.1.4.4 (default-linux/x86/2006.1, gcc-4.2.3, glibc-2.7-r1, 2.6.24-zen3 i686) ================================================================= System uname: 2.6.24-zen3 i686 Intel(R) Pentium(R) M processor 1.86GHz Timestamp of tree: Thu, 06 Mar 2008 16:17:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 3.2_p33 dev-java/java-config: 1.3.7, 2.1.5 dev-lang/python: 2.5.1-r5 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1 sys-devel/binutils: 2.18-r1 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.24 ACCEPT_KEYWORDS="x86 ~x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=pentium4m -O2 -pipe -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/openjms/config /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/kde/4.0/env /usr/kde/4.0/share/config /usr/kde/4.0/shutdown /usr/share/config /var/bind /var/qmail/alias /var/qmail/control" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=pentium4m -O2 -pipe -fomit-frame-pointer -fvisibility-inlines-hidden" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="" FEATURES="ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict unmerge-orphans userfetch userpriv usersandbox" GENTOO_MIRRORS="http://gentoo.wpi.edu/gentoo ftp://ftp.gtlib.gatech.edu/pub/gentoo http://distfiles.gentoo.org" INSTALL_MASK="" LANG="en_US.UTF-8" LC_ALL="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--enable-new-dtags -Wl,--sort-common -s" LINGUAS="en en_US" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_EXTRA_OPTS="" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/custom-kernels /usr/portage/local/layman/netscape /usr/portage/local/layman/sabayon /usr/portage/local/layman/enlightenment /usr/local/portage" SYNC="rsync://gentoo.wpi.edu/gentoo-portage" USE="7zip X Xaw3d a52 aac aalib acpi administrator aim akode alias alsa amarok amazon amr animgif ansi ao apache2 apm applet artswrappersuid aspnet2 async asyncns athena audacious audiofile autoipd automount avahi avalon-framework avalon-logkit backtrace bash-completion bcmath bdf beagle berkdb bidi big-tables binfilter bittorrent blas blender-game bluetooth boost branding bzip2 cairo calendar caps captury cardbus cdda cddb cdinstall cdio cdparanoia cdr chm chroot clamav clearcase cli clisp colordiff connectionstatus console contentcache corba cpudetection cpufreq cracklib crypt cscope css ctype cups curl curlwrappers cursors cviewer cvs cvsgraph daap dbus device-mapper devil directfb disassembler disk-partition divx djbfft djvu dnd dri dts dvd dvdr dvdread dynamicplugin eap-tls ecc emacs emerald emovix enca encode enscript eolconv epydoc equalizer erandom exif expat extra-cardsets extraengine fam fame fastbuild fasttrack fat fbcon fbcondecor fbsplash ffmpeg fftw finger firefox fits flac flash flatfile flexresp2 fltk fontconfig foomaticdb fortran fpx freetype ftp fuse g15 gd gdbm gif gimpprint glade glib glibc-compat20 glibc-omitfp glitz glut gmedia gmp gnutella gnutls gpgme gphoto2 gpm graphviz gs gsm gstreamer gtk gtkhtml hal hash hddtemp hdri highlight history hou howl-compat hpn htmlhandbook http httpd icons iconv icq icu id3 id3tag idn ieee1394 image imagemagick inifile inline innodb inode inotify ipod ipv6 isdnlog ithreads jabber java java-internal java5 javascript jbig jce jikes jingle jms jmx jpeg jpeg2k kcal kde kdeenablefinal kdehiddenvisibility kdm kerberos kig-scripting kqemu lame lapack latex lcms ldap ldap-sasl libcaca libgcrypt libnotify libsamplerate libsexy libtommath libvisual libwww live lm_sensors logitech-mouse lzo mad magic mailwrapper maps math matroska md5sum mdnsresponder-compat mhash midi mikmod mime mingmjpeg mmap mmx mmxext mng modplug mono motif mozdom mozembed mp2 mp3 mp4 mp4live mpeg mpeg2 mpi mplayer mtp mudflap multiuser musepack music musicbrainz mysql mysqli ncurses net netboot netjack network network-cron new-clx nfs nis nls nntp no-helper nocd nova nowin nowlistening nptl nptlonly nsplugin ntfs numeric nvidia offensive ogg openal openexr opengl openmp openssl opensslcrypt oscar pam pango pccts pch pcmcia pcntl pcre pdf perfprofiling perl perlsuid php physfs plasma plib plotutils plugins png pnm pop posix postproc ppds pppd prediction prelude psyco pulseaudio pyste python qt-static qt3 qt3support qt4 query-browser quicktime rar rdesktop react readline real realmedia reflection reiser4 reiserfs remix replaygain replytolist rtc rtsp samba sasl scenarios sdl sdl-image semantic-desktop sensord server session shorten simplexml skins slang slp smime sms smtp sndfile snmp snortsam soap sockets socks5 solver sou sound soundex sounds sox speex spell spl sql sqlite sqlite3 srp srt sse sse2 ssl startup-notification statistics stream subversion suhosin suid svg svga svgz swat swig syslog sysvipc szip taglib tagwriting tcl tcpd tetex texteffect textures tga themes theora threads thunderbird tidy tiff timestats tk tokenizer tomsfastmath toolbar toolkit-scroll-bars tordns translator trayicon truetype tunepimp twolame unicode upnp urandom usb userlocales userpriv vcd vcdx vhosts videos vim vim-pager vim-syntax vim-with-x visualization vlm vnc vncviewer voice vorbis vorbis-psy vpopmail wavpack webdav webpresence wifi win32codecs winbind wireshark wma wmf wmp wordexp workbench wxwindows x264 x86 xanim xattr xcomposite xemacs xface xforms xft xine xinerama xinetd xml xmldoclet xmlreader xmlrpc xmlwriter xorg xosd xpm xprint xrender xscreensaver xsl xulrunner xv xvid xvmc xvnc yv12 zip zlib zoran" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expiresext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="g15 ncurses text xosd" LINGUAS="en en_US" USERLAND="GNU" VIDEO_CARDS="nvidia nv" Unset: CPPFLAGS, CTARGET, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS
*** Bug 212548 has been marked as a duplicate of this bug. ***
*** Bug 212565 has been marked as a duplicate of this bug. ***
*** Bug 212598 has been marked as a duplicate of this bug. ***
Running eselect wxwidgets set 1 seems to have fixed the issue for me.
Thanks, that indeed has fixed it. Wonder if the maintainer will notice.
Created attachment 147274 [details, diff] Patch to warn user to run eselect wxwidgets on configure failure.
Created attachment 147280 [details, diff] patch to warn users to run eselect wxwidgets on configure failure wasnt awake sent wrong patch
had the same problem here, eselect fixed it. Isn't only issuing a warning a little 'weak' to fix this bug ?
sci-chemistry/openbabel-2.2.0_beta5 has the same problem.
I think it is a valid solution since the ewarn is called on configure failing. So the user's emerge would error out but the instructions to correct the issue would be right there. It also doesn't bother users that aren't having the issue.
Created attachment 154461 [details, diff] ewarn patch updated for beta5
The wxwindows issue should be fixed in openbabel-2.2.0. Please re-open if you still have this problem. Thanks, Markus
Fixed for good ;)
