while emerging sci-biology/emboss-4.0.0 I got the standard file collision portage message: * This package will overwrite one or more files that may belong to other ... * Detected file collision(s): * * /usr/bin/emma then I ran: # portageq owners / /usr/bin/emma sci-biology/emboss-4.0.0 /usr/bin/emma dev-java/emma-2.0.5312-r1 /usr/bin/emma that means that packages sci-biology/emboss-4.0.0 and dev-java/emma-2.0.5312-r1 install the same file /usr/bin/emma emboss was compiled with USE flags X and png; emma was compiled without any possible flags I attach my emerge --info: Portage 2.1.4.4 (default-linux/amd64/2007.0, gcc-4.1.2, glibc-2.6.1-r0, 2.6.23-gentoo-r9 x86_64) ================================================================= System uname: 2.6.23-gentoo-r9 x86_64 AMD Athlon(tm) 64 Processor 3000+ Timestamp of tree: Sun, 02 Mar 2008 01:16:01 +0000 app-shells/bash: 3.2_p17-r1 dev-java/java-config: 1.3.7, 2.1.4 dev-lang/python: 2.4.4-r6 dev-python/pycrypto: 2.0.1-r6 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r1 sys-devel/automake: 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.18-r1 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=athlon64 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=athlon64 -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks metadata-transfer sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="ftp://gentoo.mirror.web4u.cz/ ftp://ftp.sh.cvut.cz/MIRRORS/gentoo/gentoo" LANG="en_US.UTF-8" LC_ALL="en_US.UTF-8" LINGUAS="en sk cs" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/layman/science /usr/local/portage/layman/sunrise /usr/local/portage /usr/local/portage/layman" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="3dnow X X11 a52 aac aalib accessibility acl acpi alsa amd64 amr apache audiofile berkdb bitmap-fonts branding c++ cdr cli cracklib crypt ctype cups cvs dbus divx djvu dri dts dvd dvdr dvi ffmpeg firefox flac flash fontconfig fortran gcj gd gdbm gif gimp glade glitz gnuplot gnutls gpm gtk hal haskell iconv icq imlib ipv6 isdnlog java jpeg jpg kde kipi latex live lm_sensors mad matroska midi mmx mozilla mp3 mpeg mudflap mysql mysqli mythtv ncurses nls nptl nptlonly ogg opengl openmp pam pcmcia pcre pdf perl php png pppd python qt3 qt4 quicktime readline realmedia reflection sdl session slang spl sql sse sse2 ssl svg symlink tcpd theora tif tiff truetype truetype-fonts ttf type1 type1-fonts unicode vhosts vim-syntax vorbis xanim xcomposite xcompositensplugin xine xorg xscreensaver xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en sk cs" USERLAND="GNU" VIDEO_CARDS="radeon fglrx" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS Reproducible: Always Steps to Reproduce: 1. # emerge =dev-java/emma-2.0.5312-r1 2. # emerge =sci-biology/emboss-4.0.0 3. # portageq /usr/bin/emma Actual Results: portageq owners / /usr/bin/emma sci-biology/emboss-4.0.0 /usr/bin/emma dev-java/emma-2.0.5312-r1 /usr/bin/emma Expected Results: sci-biology/emboss-4.0.0 /usr/bin/emma OR dev-java/emma-2.0.5312-r1 /usr/bin/emma
On the emma side we could make the launcher optional via a launcher use flag and block emboss if it's set on. We would use EAPI=1 to set it to on.
(In reply to comment #1) > On the emma side we could make the launcher optional via a launcher use flag > and block emboss if it's set on. We would use EAPI=1 to set it to on. > Sorry for the long delay in responding. If you guys could implement a use flag and block emboss if needed that would be great. Thanks, Markus
(In reply to comment #2) > (In reply to comment #1) > > On the emma side we could make the launcher optional via a launcher use flag > > and block emboss if it's set on. We would use EAPI=1 to set it to on. > > > > Sorry for the long delay in responding. If you guys could implement a use > flag and block emboss if needed that would be great. > Added. Arches please mark emma-2.0.5312-r2 stable
ppc stable
x86 stable
amd64 stable, all arches done.
