The meme mast system of programs to discover motifs in protein and DNA sequences. The build system unfortunately depends on app-shells/tcsh, similar to ncbi_tools, and has options to build and install the entire suite of programs as a website for online access -- however, integrating that, at the moment, would Just Take Too Long [tm], so am creating an ebuild to simply install the meme and mast executeables -- the base motif finding system. Also there are options for building parallel processing executeables which are not being addressed in this revision.
Created attachment 11906 [details] meme-3.0.4.ebuild
Created attachment 11907 [details, diff] buildsystem-3.0.4.patch
Created attachment 11908 [details, diff] usecflags-3.0.4.patch
Created attachment 11909 [details] MEME MEME copyright and distribution notice
Created attachment 11911 [details, diff] meme-3.0.4.ebuild fix description
NB: discovering this build needs some fixes for proper runtime operation. Same goes for blocked #20847 -- also have new upstream for meta-meme. Watch this space.
Attempting to run the result of this ebuild has shown there are major issues with the internals of the software -- may need to install the precompiled binaries in /opt as a stop gap as it doesn't look like this app suite will be FHS compliant without some work on the internals. This work isn't out of the question, especially since have been in contact with the author, but will not be happening this week. The reality is that I intend to use this program in my research and so the motiviation is reasonably high to fix it by next wednesday.
Close bug, after contacting the original reporter.
