There is a new stable version and an new pre version availably. Could it be possible to update the ebuilds? Reproducible: Always
Created attachment 142739 [details, diff] 0.4.1-as-needed.patch updated version of the asneeded patch. unpack works fine for the adopted ebuild, but src_compile breaks with i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/with-map with-map.o ./.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.4.1/work/coot-0.4.1/coot-utils/.libs/libcoot-coord-extras.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.4.1/work/coot-0.4.1/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.4.1/work/coot-0.4.1/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.4.1/work/coot-0.4.1/coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.4.1/work/coot-0.4.1/coot-utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-minimol-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz /usr/lib/libmmdb.so -lm with-map.o: In function `main': with-map.cc:(.text+0x26ee): undefined reference to `coot::util::density_around_point(clipper::Coord_orth const&, clipper::Xmap<float> const&, float)' collect2: ld returned 1 exit status make[1]: *** [with-map] Error 1 make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.4.1/work/coot-0.4.1/ideal' make: *** [all-recursive] Error 1
As I mentioned on bug #209023, I've been testing 0.4.1 and running into a few weird issues. For example, switching stereo on or off makes all maps disappear; a number of the icons along the right edge don't show up; you can't close the refine dialog without actually clicking the X.
I'm a little stuck on bug #228915 -- wanted to update to 0.5_pre1-r1212.
Current coot-0.3.3 available for ~amd64 (gcc version 4.3.2 (Gentoo 4.3.2 p1.2, pie-10.1.2)) is absolutely uncompilable due to bugs in the x11-libs/gtk-canvas-0.1.1-r2 and x11-libs/guile-gtk-2.0 packages.
I am working on 0.5.2. The are some changes in the dependencies due to which it isn't in the tree yet. If you want to test it take a look in my overlay http://gentoo.j-schmitz.net/portage/ebuilds/
