Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 207109 - sci-biology/dialign-t-0.2.2 x86 and amd64 stabilization request
Summary: sci-biology/dialign-t-0.2.2 x86 and amd64 stabilization request
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High enhancement (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: STABLEREQ
Depends on:
Blocks:
 
Reported: 2008-01-23 01:17 UTC by Martin Mokrejš
Modified: 2008-02-17 08:42 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---

Attachments
Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.
Description Martin Mokrejš 2008-01-23 01:17:44 UTC 
Please stabilize for x86 and amd64.
Comment 1 Markus Meier gentoo-dev 2008-02-16 09:49:51 UTC 
How can this be tested? A testcase would be great ;)
Comment 2 Jeffrey Gardner (RETIRED) gentoo-dev 2008-02-16 22:42:38 UTC 
I'll provide a couple of files that you can test against.

Download http://je-fro.net/GAPDH.fasta and http://je-fro.net/SDHC.fasta
Then run dialign-t with a few of the options like,

dialign-t /usr/lib64/dialign-t/conf GAPDH.fasta.txt GAPDH.fasta.aln
dialign-t -O /usr/lib64/dialign-t/conf SDHC.fasta SDHC.fasta.aln
dialign-t -O -P /usr/lib64/dialign-t/conf SDHC.fasta SDHC.fasta.aln

(might be lib32 or just lib depending on the box)

You can check your results (the .aln files) with less, or something nicer like clustalx.
Comment 3 Christian Faulhammer (RETIRED) gentoo-dev 2008-02-17 08:11:14 UTC 
x86 stable
Comment 4 Christian Faulhammer (RETIRED) gentoo-dev 2008-02-17 08:42:55 UTC 
amd64 stable, closing as we are last one