http://ndbserver.rutgers.edu/services/help/rnaview-readme.html RNAView Installation Instructions RNAVIEW program is developed to quickly display the secondary structure of RNA/DNA with tertiary interactions. It is fully implemented with Leontis and Westhof's ( RNA (2001) 7, 499-512), convention for the edge-to-edge hydrogen bonding interactions. The program has been tested in Linux, UNIX, SUN, and MAC systems How to install the program: The program can be installed in any directory (for example /?/?/?/) 1. Unpack the program package in the directory that you desire (e.g. /?/?/?/ ). TYPE zcat RNAVIEW.tar.gz | tar xvf - 2. Install the program Go to the /?/?/?/RNAVIEW/ directory Type make An executable file rnaview will be placed in the directory /?/?/?/RNAVIEW/bin/ 3. Define the environment variable RNAVIEW to point to the installation directory (e.g. /?/?/?/RNAVIEW) Add the following sentences to your shell script.) (or type the two sentences in the window, before executing the program: For C shell users: setenv RNAVIEW /?/?/?/RNAVIEW setenv PATH "/?/?/?/RNAVIEW/bin:"$PATH For Bourne shell users: RNAVIEW=/?/?/?/RNAVIEW; export RNAVIEW PATH="/?/?/?/RNAVIEW/bin:"$PATH; export PATH 4. To test the program, go to /?/?/?/RNAVIEW/test type rnaview -p tr0001.pdb The 2D structure is shown by tr0001.pdb.ps and base pair types is given by tr0001.pdb.out
Added convenience env.d file to new revision. Thanks for reporting.
