Bug 191032 – sci-chemistry/jmol-11.0.3-r1 fails to build

• Status: VERIFIED FIXED
• Product: Gentoo Linux

[Description Christian Faulhammer (RETIRED) 2007-09-02 07:29:33 UTC]

>>> Emerging (1 of 1) sci-chemistry/jmol-11.0.3-r1 to /
 * jmol-11.0.3-full.tar.gz RMD160 ;-) ...                                                                                [ ok ]
 * jmol-11.0.3-full.tar.gz SHA1 ;-) ...                                                                                  [ ok ]
 * jmol-11.0.3-full.tar.gz SHA256 ;-) ...                                                                                [ ok ]
 * jmol-11.0.3-full.tar.gz size ;-) ...                                                                                  [ ok ]
 * checking ebuild checksums ;-) ...                                                                                     [ ok ]
 * checking auxfile checksums ;-) ...                                                                                    [ ok ]
 * checking miscfile checksums ;-) ...                                                                                   [ ok ]
 * checking jmol-11.0.3-full.tar.gz ;-) ...                                                                              [ ok ]
 * Using: sun-jdk-1.6
>>> Unpacking source...
>>> Unpacking jmol-11.0.3-full.tar.gz to /var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work
 * Applying jmol-11.0.3-nointl.patch ...                                                                                 [ ok ]
 * Applying jmol-11.0.3-manifest.patch ...                                                                               [ ok ]
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/Jmol.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet0.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet1.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet2.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet3.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet4.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet5.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet6.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned0.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned1.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned2.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned3.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned4.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned5.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned6.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolAppletSigned_i18n.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/JmolApplet_i18n.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/plugin-jars/dadmlbrowser.jar'
removed `/var/tmp/portage/sci-chemistry/jmol-11.0.3-r1/work/jmol-11.0.3/plugin-jars/dirbrowser.jar'
!!! ERROR: sci-chemistry/jmol-11.0.3-r1 failed.
Call stack:
  ebuild.sh, line 1638:   Called dyn_unpack
  ebuild.sh, line 763:   Called qa_call 'src_unpack'
  ebuild.sh, line 44:   Called src_unpack
  jmol-11.0.3-r1.ebuild, line 53:   Called die

!!! Failed to move netscape.jar.
!!! If you need support, post the topmost build error, and the call stack if relevant.
!!! A complete build log is located at '/var/log/portage/sci-chemistry:jmol-11.0.3-r1:20070902-072107.log'.

!!! When you file a bug report, please include the following information:
GENTOO_VM=sun-jdk-1.6  CLASSPATH="." JAVA_HOME="/opt/sun-jdk-1.6.0.02"
JAVACFLAGS="-source 1.4 -target 1.4" COMPILER=""
and of course, the output of emerge --info

Portage 2.1.2.12 (default-linux/x86/2007.0/desktop, gcc-4.1.2, glibc-2.5-r4, 2.6.22-gentoo-r5 i686)
=================================================================
System uname: 2.6.22-gentoo-r5 i686 AMD Athlon(tm) XP 2500+
Gentoo Base System release 1.12.9
Timestamp of tree: Sun, 02 Sep 2007 05:50:01 +0000
distcc 2.18.3 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [enabled]
app-shells/bash:     3.2_p17
dev-java/java-config: 1.3.7, 2.0.33-r1
dev-lang/python:     2.4.4-r4
dev-python/pycrypto: 2.0.1-r6
sys-apps/baselayout: 1.12.9-r2
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61-r1
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.16
sys-devel/libtool:   1.5.24
virtual/os-headers:  2.6.21
ACCEPT_KEYWORDS="x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c"
CXXFLAGS="-O2"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS=""
FEATURES="ccache distcc distlocks metadata-transfer parallel-fetch sandbox sfperms strict userpriv"
GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo/"
LANG="de_DE.utf8"
LC_ALL="de_DE.utf8"
LINGUAS="de"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.informatik.rwth-aachen.de/gentoo-portage"
USE="3dnow 3dnowext X a52 acl acpi aiglx alsa apache2 apm applet artworkextra asf audiofile avahi bash-completion beagle berkdb bidi bitmap-fonts bogofilter bootsplash branding bzip2 cairo ccache cdda cddb cdparanoia cdr cli console cracklib crypt css cups curl custom-cflags dbus dga directfb divx4linux dri dts dvd dvdr dvdread dvi eds emacs emboss encode esd evince evo exif fam fat fbcon fdftk ffmpeg firefox flac foomaticdb fortran ftp gb gcj gdbm gif glitz gnome gpm gsf gstreamer gtk gtk2 gtkhtml hal howl iconv icq idn imagemagick imap imlib isdnlog java javascript jpeg jpeg2k kde ldap libnotify lirc lm_sensors mad maildir matroska mbox midi mikmod mime mmx mmxext mng mono mp3 mpeg mpeg2 mudflap mule mysql nautilus ncurses nforce2 nls noaudio nocardbus novideo nowebdav nptl nptlonly nsplugin nvidia objc objc++ objc-gc offensive ogg opengl openmp pam pango pcre pdf perl php plotutils pmu png ppds pppd prediction preview-latex print python qt3 qt3support qt4 quicktime readline reflection samba sdk session slang spell spl sse ssl svg svga t1lib tcl tcpd tetex theora threads thumbnailing tiff tk toolkit-scroll-bars totem tracker truetype truetype-fonts type1-fonts udev unicode usb userlocales vcd videos vorbis win32codecs wmf wxwindows x86 xface xft xine xml xorg xosd xpm xv xvid zlib" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="mouse keyboard" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de" LIRC_DEVICES="atiusb" USERLAND="GNU" VIDEO_CARDS="radeon vesa fbdev"
Unset:  CTARGET, INSTALL_MASK, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY

[Comment 1 Jeffrey Gardner (RETIRED) 2007-09-02 21:35:32 UTC]

Okay, let me take a look...

[Comment 2 Jeffrey Gardner (RETIRED) 2007-09-02 23:30:28 UTC]

Should be fixed in cvs.
Thanks!

[Comment 3 Christian Faulhammer (RETIRED) 2007-09-03 05:45:10 UTC]

Thanks, emerges and works fine.