The update of Singular from 3.0.2.1 to version 3.0.3 fails with errors in the configuration. Its seems that some files are missing: MP.h, MPT.h, factory.h, factor.h, omalloc.h... Reproducible: Always Steps to Reproduce: 1.emerge -u singular 2. 3. Actual Results: emerge stops with errors at the configure stage Expected Results: successful compile # emerge --info Portage 2.1.2.11 (default-linux/amd64/2006.0, gcc-4.1.2, glibc-2.5-r4, 2.6.21-gentoo-r4 x86_64) ================================================================= System uname: 2.6.21-gentoo-r4 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor 3800+ Gentoo Base System release 1.12.9 Timestamp of tree: Mon, 06 Aug 2007 05:00:01 +0000 ccache version 2.4 [enabled] dev-java/java-config: 1.3.7, 2.0.33-r1 dev-lang/python: 2.4.4-r4 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r7 sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.17 sys-devel/gcc-config: 1.3.16 sys-devel/libtool: 1.5.23b virtual/os-headers: 2.6.21 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=k8 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c" CXXFLAGS="-march=k8 -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict" GENTOO_MIRRORS="ftp://ftp.free.fr/mirrors/ftp.gentoo.org/ http://ftp.twaren.net/Linux/Gentoo/ http://gd.tuwien.ac.at/opsys/linux/gentoo/" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acpi aim alsa amd64 apache apache2 apm arts audiofile bash-completion bcmath berkdb bidi bitmap-fonts blas bluetooth bzip2 cdparanoia cdr cli cracklib crypt cups curl curlwrappers dga directfb doc dri dts dvb dvd dvdr dvdread eds emacs emboss encode esd evo examples exif fastcgi fbcon ffmpeg fftw flac foomaticdb fortran ftp ggi gif ginac glut gnome gnutls gphoto2 gpm gstreamer gtk gtk2 hal iconv icq idn ieee1394 imagemagick imap imlib ipv6 isdnlog jabber java javascript jikes jpeg jpeg2k kde kdeenablefinal lapack lcms ldap leim libedit libwww lirc lm_sensors lzw lzw-tiff mad madwifi matroska midi mikmod mime mng mnogosearch mono mp3 mpeg mpi msn mudflap mule mysql mysqli nas ncurses nls nptl nptlonly nsplugin nvidia ogg ole openal opengl openmp osc oscar oss pam pcre pdf perl php plotutils png pppd python qt3 qt3support qt4 quicktime radius readline reflection samba scanner sdl seamonkey server session sockets socks5 spell spl ssl symlink szip tcpd tetex theora threads tidy tiff tokenizer truetype truetype-fonts type1-fonts unicode usb v4l v4l2 vcd vhosts vorbis wifi wxwindows xcomposite xface xine xml xmlrpc xorg xosd xpm xv xvid yahoo zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIRC_DEVICES="imon" USERLAND="GNU" VIDEO_CARDS="nvidia vesa fbdev" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 127028 [details] log file for configuration produced with Singular ebuild
Hi, Could you please also post the output of the actual emerge. I suspect that things fail in one of the sub-directories. The errors in the config.log you posted (assuming it is the one from the top directory) should be non fatal. Thanks, Markus
I looked at it briefly -- the "configure" stage has the "--with-MP" flag set, which must be looking for some package that isn't installed. My guess is that a little upstream research will come up with an answer, but I won't have a chance to do it until tonight.
Yeah, I enabled the --with-MP flag in 3.0.3 since it works fine on all my x86 dev machines. If it causes trouble with amd64 I have no problem going back to --without-MP unless we can come up with a fix. Unfortunately, I can't really look into this since I don't have access to an amd64 box. cheers, Markus
I have one ... tell me what you need to test and I'll test it tonight. :)
Well, if it compiles for you on amd64 as is (i.e. --with-MP) please let me know. In that case we'll have to wait for rainer to give us some more detail as to where and how configure fails. Thanks!
(In reply to comment #6) > Well, if it compiles for you on amd64 as is (i.e. --with-MP) > please let me know. In that case we'll have to wait for rainer > to give us some more detail as to where and how > configure fails. Thanks! > The ebuild fails in configure on my AMD64. I haven't tried it on an x86 yet. Meanwhile, I unpacked the source and if you look at the top directory, you'll see znmeb@DreamScape ~/singular/Singular-3-0-3 $ l BUGS Makefile config.sub* libfac/ COPYING Makefile.in configure* mkinstalldirs* CVS/ Singular/ configure.in modules/ ChangeLog Tst/ doc/ ntl/ GPL config.cache emacs/ omalloc/ Hannes-Sprueche config.guess* factory/ sed.bindist.cmd IntegerProgramming/ config.log install-sh* singuname.sh* MP/ config.status* kernel/ x86_64-Linux/ So "MP" is part of the source distribution. I did a "configure" and a "make" in *this* directory but it's not done yet, so I don't know if it went ahead and did the MP build. Where does the ebuild do its "configure"?
Created attachment 127229 [details] log file of failed emerge on amd64
Created attachment 127231 [details] log file from successful emerge on x86 (athlon t-bird)
Created attachment 127232 [details] emerge --info on amd64 where it failed
Created attachment 127234 [details] emerge --info on x86 where it succeeded
Well ... I just confirmed it dies on AMD64 and works on x86, but I didn't read through the logs for clues -- just posted them here. Meanwhile, a straight build from the source tarball ran to completion on the AMD64, but I didn't have the full build instructions for the "share" tarball. This is just plain bizarre ... it has to be something simple I'm not seeing right in front of my nose. :)
I've disabled MP again in the ebuild until we've figured out what the trouble is on amd64. The problem is that configure in the Singular directory fails. I had a look at the file and from the amd64 output you posted I don't see any way it could reach the particular point where it eventually fails. This leads me to suspect that something bad is happening during autoconf on amd64 that causes this. Hence, would you please be able to diff the configure files in Singular-3.0.3/Singular on amd64 and x86 AFTER the autoconf step. If this turns up to much garbage please just post the amd64 configure file generated by autoconf. Thanks, Markus
Created attachment 127333 [details] recursive diff of work trees (x86 and amd64) after emerge OK ... I started this up using the following commands on both the x86 and amd64 # cd /var/tmp/portage/sci-mathematics # rm -fr singular-3.0.3 # FEATURES='keepwork keeptemp' emerge -v singular The plan was to diff the whole build trees for the two machines. Well ... the x86 emerge completed normally as expected, leaving behind a build tree. So I went over to the amd64 and started it up. There were some complaints during the configure step, but it ran all the way to completion and left behind an amd64 build tree. So ... here's the diff ... but I think it's installed now.
Thanks a lot! Unfortunately, I didn't find anything in the diff that would tell me what the problem on amd64 could be when "--with-MP" is turned on. Hence, I'd suggest we leave "--without-MP" for now until somebody is able to provide a patch that allows compilation on amd64 with MP turned on. cheers, Markus
Since after removing "--with-MP" singular seems to compile again on amd64 I am going to close this as fixed. Please feel free to reopen if any of you should be able to provide a patch that resolves the MP issues on amd64. Thanks, Markus
