Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 183879 - please stabilize sci-chemistry/pymol-0.99_rc10
Summary: please stabilize sci-chemistry/pymol-0.99_rc10
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High enhancement (vote)
Assignee: Jeffrey Gardner (RETIRED)
URL:
Whiteboard:
Keywords: STABLEREQ
Depends on:
Blocks:
 
Reported: 2007-07-01 19:45 UTC by Jeffrey Gardner (RETIRED)
Modified: 2007-07-04 18:04 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

Note You need to log in before you can comment on or make changes to this bug.
Description Jeffrey Gardner (RETIRED) gentoo-dev 2007-07-01 19:45:02 UTC
This release benefits from lots of bug fixes and improvements.
Please test by downloading a .pdb file such as:
http://www.rcsb.org/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=2FEJ
and open it with pymol.

Thanks!
je_fro
Comment 1 Justin Lecher (RETIRED) gentoo-dev 2007-07-01 20:13:08 UTC
There is a final release of pymol 1.0 avaible. Could there be build an ebuild for this?
Comment 2 Jeffrey Gardner (RETIRED) gentoo-dev 2007-07-01 20:47:35 UTC
(In reply to comment #1)
> There is a final release of pymol 1.0 avaible. Could there be build an ebuild
> for this?
> 

Yes, but we won't discuss that on this stabilization bug. 
emerge --sync in a few hours.
Comment 3 Lars Weiler (RETIRED) gentoo-dev 2007-07-02 12:52:28 UTC
ppc stable.
Comment 4 Simon Cooper 2007-07-02 13:35:37 UTC
Compiles & works on AMD64 (tested with example)


Portage 2.1.2.9 (default-linux/amd64/2007.0/desktop, gcc-4.1.2, glibc-2.5-r3, 2.6.21-gentoo-r3 x86_64)
=================================================================
System uname: 2.6.21-gentoo-r3 x86_64 AMD Turion(tm) 64 X2 Mobile Technology TL-56
Gentoo Base System release 1.12.9
Timestamp of tree: Mon, 02 Jul 2007 10:20:01 +0000
ccache version 2.4 [enabled]
dev-java/java-config: 1.3.7, 2.0.33-r1
dev-lang/python:     2.4.4-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.4-r7
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.17
sys-devel/gcc-config: 1.3.16
sys-devel/libtool:   1.5.23b
virtual/os-headers:  2.6.21
ACCEPT_KEYWORDS="amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=athlon64 -O2 -msse3 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb"
CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-march=athlon64 -O2 -msse3 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="buildpkg ccache collision-protect distlocks fixpackages metadata-transfer multilib-strict sandbox sfperms strict test userpriv"
GENTOO_MIRRORS="http://www.mirror.ac.uk/mirror/distro.ibiblio.org/pub/linux/distributions/gentoo http://gentoo.virginmedia.com http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo"
LINGUAS="en en_GB"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/portage/local/layman/enlightenment /usr/portage/local/layman/sunrise /usr/portage/local"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="3dnow X Xaw3d a52 aac acpi alsa amd64 audiofile berkdb bitmap-fonts branding bzip2 cairo cddb cdparanoia cdr cli cracklib cups curl dbus dri dts dvb dvd dvdr dvdread emboss encode evo exif expat fam ffmpeg firefox foomaticdb gdbm gif glitz gs gtk guile hal iconv icu imagemagick imlib isdnlog ithreads java javascript jpeg libg++ libwww lirc logrotate mad midi mmap mmx mmxext mp3 msn mudflap ncurses nls nptl nptlonly nsplugin offensive ogg openal opengl openmp pam pcre pdf perl png ppds pppd python qt3support qt4 readline reflection sdl session sndfile spl sse sse2 ssl svg symlink tcl tcpd test threads tiff tk truetype truetype-fonts type1-fonts unicode usb v4l v4l2 vorbis x264 xcb xml xorg xosd xscreensaver xv zlib" ALSA_CARDS="hda-intel usb-audio" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse synaptics ps2mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en en_GB" LIRC_DEVICES="mceusb2" USERLAND="GNU" VIDEO_CARDS="nvidia"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 5 Christian Faulhammer (RETIRED) gentoo-dev 2007-07-02 19:05:12 UTC
x86 stable
Comment 6 Christoph Mende (RETIRED) gentoo-dev 2007-07-04 18:04:50 UTC
amd64 done, thanks Simon