175293 – [new ebuild] sci-biology/amos-2.0.2

Bug 175293 - [new ebuild] sci-biology/amos-2.0.2

Summary: [new ebuild] sci-biology/amos-2.0.2

Status:	RESOLVED FIXED

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	New packages (show other bugs)
Hardware:	All Linux

Importance:	High enhancement (vote)
Assignee:	Default Assignee for New Packages

URL:	http://amos.sourceforge.net/
Whiteboard:	[sunrise-overlay]
Keywords:	EBUILD, InOverlay

Depends on:
Blocks:

Reported:	2007-04-20 00:59 UTC by Andrey Kislyuk (RETIRED)
Modified:	2008-05-26 14:52 UTC (History)
CC List:	2 users (show)

See Also:
Package list:
Runtime testing required:	---

Attachments
amos-2.0.2.ebuild (amos-2.0.2.ebuild,559 bytes, text/plain) 2007-04-20 01:16 UTC, Andrey Kislyuk (RETIRED)	Details
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Description Andrey Kislyuk (RETIRED) gentoo-dev

2007-04-20 00:59:24 UTC

A Modular, Open-Source whole genome assembler

Comment 1 Andrey Kislyuk (RETIRED) gentoo-dev

2007-04-20 01:16:15 UTC

Created attachment 116767 [details]
amos-2.0.2.ebuild

The latest version will be available at

http://overlays.gentoo.org/proj/sunrise/browser/sunrise/sci-biology/amos

NB: This is a huge package. I haven't really tested it, since I don't have any huge genomes to assemble, and it has hundreds of parts. There may be dependencies I haven't catched, please look out for those. The two dependencies in the ebuild are put as instructed by the README.

Also, make chokes when MAKEOPTS=jN where N>1, hence "emake -j1" in ebuild. Upstream has been notified.

Comment 2 Andrey Kislyuk (RETIRED) gentoo-dev

2008-02-18 05:45:19 UTC

To add to the initial entry: I've been working with this package, and the ebuild works fine. All the core executables are completely functional.

Comment 3 Andrey Kislyuk (RETIRED) gentoo-dev

2008-05-26 14:52:23 UTC

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