An HMM-based microbial gene finding system from TIGR License text: http://www.gentoo-sunrise.org/sunrise/browser/sunrise/licenses/glimmer
Created attachment 113264 [details] glimmer-3.02.ebuild
The latest version will be available at http://www.gentoo-sunrise.org/sunrise/browser/sunrise/sci-biology/glimmer/glimmer-3.02.ebuild
In gentoo-x86
Please reopen. >>> Install glimmer-3.02 into /var/tmp/portage/sci-biology/glimmer-3.02/image/ category sci-biology >>> Completed installing glimmer-3.02 into /var/tmp/portage/sci-biology/glimmer-3.02/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/bin/build-fixed usr/bin/glimmer3 usr/bin/uncovered usr/bin/entropy-score usr/bin/anomaly usr/bin/multi-extract usr/bin/start-codon-distrib usr/bin/long-orfs usr/bin/window-acgt usr/bin/score-fixed usr/bin/build-icm usr/bin/entropy-profile usr/bin/extract >>> Installing sci-biology/glimmer-3.02 * This package will overwrite one or more files that may belong to other * packages (see list below). You can use a command such as `portageq * owners / <filename>` to identify the installed package that owns a * file. If portageq reports that only one package owns a file then do * NOT file a bug report. A bug report is only useful if it identifies at * least two or more packages that are known to install the same file(s). * If a collision occurs and you can not explain where the file came from * then you should simply ignore the collision since there is not enough * information to determine if a real problem exists. Please do NOT file * a bug report at http://bugs.gentoo.org unless you report exactly which * two packages install the same file(s). Once again, please do NOT file * a bug report unless you have completely understood the above message. * * Detected file collision(s): * * /usr/bin/extract # equery belongs /usr/bin/extract [ Searching for file(s) /usr/bin/extract in *... ] sci-chemistry/pdb-extract-1.700 (/usr/bin/extract) app-crypt/pkcrack-1.2.2 (/usr/bin/extract) app-text/html-xml-utils-3.7 (/usr/bin/extract) # Please rename the file to something else, like glimmer-extract. Don't know if it is being called under that name by some 3rd party applications. This package refers to it just in these places, so rename it there as well. docs/notes.tex scripts/g3-from-scratch.csh scripts/g3-from-training.csh scripts/g3-iterated.csh
