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Bug 163657 - sci-biology/foldingathome-5.0.2-r5 - culdn't start core checkpoint timer thread
Summary: sci-biology/foldingathome-5.0.2-r5 - culdn't start core checkpoint timer thread
Status: RESOLVED WORKSFORME
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: AMD64 Linux
: High normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2007-01-24 21:15 UTC by Travis Morgan
Modified: 2009-04-01 19:00 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Travis Morgan 2007-01-24 21:15:41 UTC
foldingathome fails to start on this one machine. I have several 64 bit machines (amd64 and emt64) running it and the others work though I can't see what's different about this system that it doesn't other than the kernel version.

downloads the core, engages successfully, starts initial work packet, and then bails with:
[20:59:51] FATAL: Couldn't start core work threadFATAL: Couldn't start core checkpoint timer thread
[20:59:51] Folding@home Core Shutdown: UNKNOWN_ERROR
[20:59:51] CoreStatus = 63 (99)
[20:59:51] + Error starting Folding@Home core.


Reproducible: Always




[ebuild   R   ] sci-biology/foldingathome-5.0.2-r5  0 kB

I also tried -r3 and same result.

> grep IA32 /usr/src/linux/.config
CONFIG_IA32_EMULATION=y
CONFIG_IA32_AOUT=y


Portage 2.1.1-r2 (default-linux/amd64/2006.1, gcc-4.1.1, glibc-2.4-r4, 2.6.18-hardened x86_64)
=================================================================
System uname: 2.6.18-hardened x86_64 Intel(R) Pentium(R) 4 CPU 2.80GHz
Gentoo Base System version 1.12.6
Last Sync: Wed, 10 Jan 2007 04:20:01 +0000
ccache version 2.3 [enabled]
app-admin/eselect-compiler: [Not Present]
dev-java/java-config: [Not Present]
dev-lang/python:     2.4.3-r4
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.3
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.61
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10
sys-devel/binutils:  2.16.1-r3
sys-devel/gcc-config: 1.3.14
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.11-r2
ACCEPT_KEYWORDS="amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /var/qmail/alias /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig ccache distlocks metadata-transfer sandbox sfperms strict"
GENTOO_MIRRORS="ftp://mirrors.tera-byte.com/pub/gentoo http://gentoo.chem.wisc.edu/gentoo/"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync1.ca.gentoo.org/gentoo-portage/"
USE="amd64 alsa_cards_ali5451 alsa_cards_als4000 alsa_cards_atiixp alsa_cards_atiixp-modem alsa_cards_bt87x alsa_cards_ca0106 alsa_cards_cmipci alsa_cards_emu10k1x alsa_cards_ens1370 alsa_cards_ens1371 alsa_cards_es1938 alsa_cards_es1968 alsa_cards_fm801 alsa_cards_hda-intel alsa_cards_intel8x0 alsa_cards_intel8x0m alsa_cards_maestro3 alsa_cards_trident alsa_cards_usb-audio alsa_cards_via82xx alsa_cards_via82xx-modem alsa_cards_ymfpci alsa_pcm_plugins_adpcm alsa_pcm_plugins_alaw alsa_pcm_plugins_asym alsa_pcm_plugins_copy alsa_pcm_plugins_dmix alsa_pcm_plugins_dshare alsa_pcm_plugins_dsnoop alsa_pcm_plugins_empty alsa_pcm_plugins_extplug alsa_pcm_plugins_file alsa_pcm_plugins_hooks alsa_pcm_plugins_iec958 alsa_pcm_plugins_ioplug alsa_pcm_plugins_ladspa alsa_pcm_plugins_lfloat alsa_pcm_plugins_linear alsa_pcm_plugins_meter alsa_pcm_plugins_mulaw alsa_pcm_plugins_multi alsa_pcm_plugins_null alsa_pcm_plugins_plug alsa_pcm_plugins_rate alsa_pcm_plugins_route alsa_pcm_plugins_share alsa_pcm_plugins_shm alsa_pcm_plugins_softvol apache2 bash-completion berkdb big-tables bitmap-fonts bzip2 cli cracklib crypt cups curl dlloader dri elibc_glibc fortran ftp gd gdbm gpm hash iconv imap input_devices_evdev input_devices_keyboard input_devices_mouse ipv6 isdnlog kerberos kernel_linux libg++ mhash mysql ncurses nls noauthcram nptl nptlonly pam pcre perl ppds pppd python readline reflection session sockets spell spl ssl tcpd truetype-fonts type1-fonts udev unicode urandom userland_GNU video_cards_apm video_cards_ark video_cards_ati video_cards_chips video_cards_cirrus video_cards_cyrix video_cards_dummy video_cards_fbdev video_cards_glint video_cards_i128 video_cards_i810 video_cards_mga video_cards_neomagic video_cards_nv video_cards_rendition video_cards_s3 video_cards_s3virge video_cards_savage video_cards_siliconmotion video_cards_sis video_cards_sisusb video_cards_tdfx video_cards_tga video_cards_trident video_cards_tseng video_cards_v4l video_cards_vesa video_cards_vga video_cards_via video_cards_vmware video_cards_voodoo xml xorg zip zlib"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Comment 1 Jeffrey Gardner (RETIRED) gentoo-dev 2007-07-08 20:04:38 UTC
Hey Travis...
Did you ever figure this out? If so, what was the problem?
Comment 2 Jeffrey Gardner (RETIRED) gentoo-dev 2008-06-18 02:26:19 UTC
I guess he fixed it
Comment 3 El Goretto 2009-04-01 19:00:55 UTC
Same problem here, on hardened x86.
It is surely related to kernel hardening setup, as I recently (1-2 months ago) change my kernel and changed some options inside too (and just find out folding@home wasn't working anymore).

tested 5.0.2-r5 and 6.02-r1 and same error.

No message from PaX or in logs. Will investigate later.


Portage 2.1.6.4 (hardened/x86, gcc-3.4.6, glibc-2.6.1-r0, 2.6.28-hardened-r6 i686)
=================================================================
System uname: Linux-2.6.28-hardened-r6-i686-AMD_Athlon-tm-_2600+-with-glibc2.3.2
Timestamp of tree: Tue, 31 Mar 2009 16:20:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:     3.2_p33
dev-lang/python:     2.5.2-r7
dev-util/ccache:     2.4-r7
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.61-r2
sys-devel/automake:  1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2
sys-devel/binutils:  2.18-r3
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   1.5.26
virtual/os-headers:  2.6.23-r3
ACCEPT_KEYWORDS="x86"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=athlon-xp -fomit-frame-pointer -fforce-addr -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/terminfo /etc/udev/rules.d"
CXXFLAGS="-O2 -march=athlon-xp -fomit-frame-pointer -fforce-addr -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="buildsyspkg ccache distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch userpriv usersandbox"
GENTOO_MIRRORS="http://ftp.heanet.ie/pub/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo http://ftp.belnet.be/mirror/rsync.gentoo.org/gentoo/ http://pandemonium.tiscali.de/pub/gentoo/"
LANG="fr_FR.UTF-8"
LC_ALL="fr_FR.UTF-8"
LDFLAGS=""
LINGUAS="fr"
MAKEOPTS="-j2"
PKGDIR="/var/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage/layman/sunrise /usr/local/portage"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext acl alsa apache2 bash-completion cli cracklib dba dedicated dvdr extensions gd gpm hardened hardenedphp ipv6 ithreads jpg lm_sensors logrotate midi mmx mmxext ncurses nfs nls nptl nptlonly pam pcre php pic readline session snmp ssl svg truetype unicode urandom x86 xorg xv zlib" ALSA_CARDS="via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_connect proxy_http rewrite setenvif status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="fr" USERLAND="GNU" VIDEO_CARDS="mga"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS