sci-libs/blas-atlas-3.7.24 failed to build on amd64 athlon x2 Maximum number of threads configured as 2 Cannot detect CPU throttling. /bin/sh: line 1: 2080 Аварийный останов ./xconfig -d s /var/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/../ -d b /var/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build -C xc 'x86_64-pc-linux-gnu-gcc' -F xc '-O3 -march=athlon64 -mtune=athlon64 -mmmx -msse -msse2 -m3dnow -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize' -C ic 'x86_64-pc-linux-gnu-gcc' -F ic '-O3 -march=athlon64 -mtune=athlon64 -mmmx -msse -msse2 -m3dnow -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize' -C sk 'x86_64-pc-linux-gnu-gcc' -F sk '-O3 -march=athlon64 -mtune=athlon64 -mmmx -msse -msse2 -m3dnow -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize' -C dk 'x86_64-pc-linux-gnu-gcc' -F dk '-O3 -march=athlon64 -mtune=athlon64 -mmmx -msse -msse2 -m3dnow -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize' -C sm 'x86_64-pc-linux-gnu-gcc' -F sm '-O3 -march=athlon64 -mtune=athlon64 -mmmx -msse -msse2 -m3dnow -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize' -C dm 'x86_64-pc-linux-gnu-gcc' -F dm '-O3 -march=athlon64 -mtune=athlon64 -mmmx -msse -msse2 -m3dnow -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize' -C if 'gfortran' -F if '' -Ss pmake '$(MAKE) -j4' -Si cputhrchk 0 -b 64 xconfig exited with 134 !!! ERROR: sci-libs/blas-atlas-3.7.24 failed. Call stack: ebuild.sh, line 1618: Called dyn_unpack ebuild.sh, line 755: Called qa_call 'src_unpack' environment, line 3779: Called src_unpack blas-atlas-3.7.24.ebuild, line 92: Called die !!! configure failed !!! If you need support, post the topmost build error, and the call stack if relevant. !!! A complete build log is located at '/var/log/portage/sci-libs:blas-atlas-3.7.24:20070116-140030.log'. Reproducible: Always
Created attachment 107178 [details] emerge log
Portage 2.1.2 (default-linux/amd64/2006.1/desktop, gcc-4.1.1, glibc-2.5-r0, 2.6.19-gentoo-r4 x86_64) ================================================================= System uname: 2.6.19-gentoo-r4 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor 4400+ Gentoo Base System version 1.12.8 Timestamp of tree: Tue, 16 Jan 2007 12:50:01 +0000 distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] ccache version 2.4 [enabled] dev-java/java-config: 1.3.7, 2.0.31-r2 dev-lang/python: 2.4.4 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: 2.4-r6 sys-apps/sandbox: 1.2.18.1 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.17 sys-devel/gcc-config: 1.3.14 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.19.2-r1 ACCEPT_KEYWORDS="amd64 ~amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O3 -march=athlon64 -mtune=athlon64 -mmmx -msse -msse2 -m3dnow -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config /var/bind" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/java-config/vms/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c" CXXFLAGS="-O3 -march=athlon64 -mtune=athlon64 -mmmx -msse -msse2 -m3dnow -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig candy ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict" GENTOO_MIRRORS="http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo http://gentoo.osuosl.org" LANG="ru_RU.UTF-8" LC_ALL="" LDFLAGS="-Wl,-O1 -Wl,--sort-common" LINGUAS="ru en" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /usr/portage/local/layman/science /usr/portage/local/layman/portage-xgl /usr/portage/local/layman/sunrise" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="7zip X Xaw3d a52 aac aalib acl acpi ada akode alsa amarok amd64 amr ao aotuv apache apache2 asf async audiofile automount avahi bash-completion berkdb bidi bitmap-fonts bl blas boost branding bzip2 cairo catalogs cdda cddb cdio cdparanoia cdr chm clearcase cli cracklib crypt cscope css cups curl cvs dbus dbx dga directfb divx djvu dlloader dmi doc double-precision dri dts dv dvd dvdr dvdread dx dxr3 dynamicplugin eds elf emboss emul-linux-x86 enca encode epydoc evo expat extensions extrafilters extramodules extras fam fame fbcon ffmpeg fftw firefox flac flexresp flexresp2 font-server fontconfig foomaticdb fortran fpx ft fuse galago gcj gd gdbm ggi gif glep glib glibc-omitfp glitz glut gmail gmedia gmp gnome gnuplot gnutls gpg2-experimental gpm graphviz gs gstreamer gtk gtk2 hal haskell iconv icu idea idn ieee1394 image imagemagick imlib inkjar ipv6 isdnlog ithreads jabber2 java jbig jce jingle jpeg jpeg2k justify kde kdehiddenvisibility kexi lame lapack largeterminal lcms lesstif libcaca libclamav libg++ libnotify linux-smp-stats live lm_sensors lzo mad mailwrapper mbox md5sum mikmod milter mjpeg mng mod_muc mod_pubsub mod_statsdx modplug mono motif mp3 mp3rtp mp4 mpeg mpi mplayer mudflap musepack mysql ncurses neXt nethack network nfs nls no-old-linux nptl nptlonly nsplugin numeric nvidia oav objc objc++ odbc odk ogg ole openal openexr opengl openssl oss pam pascal paste64 pch pcre pda pdf pear-db perforce perfprofiling perl php pic pike png posix povray ppds pppd prelude profile python qt3 qt3support qt4 quicktime rdesktop react readline realmedia reflection resolvconf restrict rle rtc ruby samba sdl sendmail sensord server session silc slang slp smp sndfile snmp sound sox speex spell spl sql sqlite sqlite3 ssl subversion svg swat symlink sysfs syslog tcl tcltk tcpd teamarena tetex tga theora threads threadsonly thunderbird tidy tiff timestats tk tools truetype truetype-fonts type1-fonts ucs2 udev unicode urandom usb utempter vcd vim vim-pager vim-with-x vorbis vorbis-psy web webadmin-commands winbind wma wmf wmp x264 xanim xattr xcb xcomposite xine xml xorg xpm xscreensaver xv xvid yv12 zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LINGUAS="ru en" USERLAND="GNU" VIDEO_CARDS="nvidia" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_RSYNC_EXTRA_OPTS
1/ Russian is not much popular among most of devs... 2/ There's not much of an error above, hard to guess... > !!! A complete build log is located at > '/var/log/portage/sci-libs:blas-atlas-3.7.24:20070116-140030.log'. Why not attach it?
Created attachment 107179 [details] log
log file attached
Hi, Thanks for your bug report! To rule out any CFLAGS related badness could you please try compiling it with CFLAGS="-O2 -march=athlon64" only and report back what happens? Thanks, Markus
By the way I have the same problems on x86 machine ( 2x PIII Coppermine 1GHz) Portage 2.1.2 (default-linux/x86/2006.1/desktop, gcc-4.1.1, glibc-2.5-r0, 2.6.19-gentoo-r4 i686) ================================================================= System uname: 2.6.19-gentoo-r4 i686 Pentium III (Coppermine) Gentoo Base System version 1.12.8 Timestamp of tree: Wed, 17 Jan 2007 01:47:01 +0000 distcc 2.18.3 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] ccache version 2.4 [enabled] dev-java/java-config: 1.3.7, 2.0.31-r2 dev-lang/python: 2.4.4 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: 2.4-r6 sys-apps/sandbox: 1.2.18.1 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.17 sys-devel/gcc-config: 1.3.14 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.19.2-r1 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-O3 -march=pentium3 -mtune=pentium3 -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize -mfpmath=sse -mmmx -msse" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/java-config/vms/ /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c" CXXFLAGS="-O3 -march=pentium3 -mtune=pentium3 -pipe -mno-tls-direct-seg-refs -fomit-frame-pointer -ftree-vectorize -mfpmath=sse -mmmx -msse" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig candy ccache distlocks metadata-transfer prelink sandbox sfperms strict" GENTOO_MIRRORS="http://distfiles.gentoo.org http://gentoo.osuosl.org" LANG="ru_RU.UTF-8" LC_ALL="" LDFLAGS="-Wl,-O1 -Wl,--sort-common" LINGUAS="ru en" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage-arm /usr/local/portage /usr/portage/local/layman/science /usr/portage/local/layman/sunrise /usr/portage/local/layman/portage-xgl" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="16bit 3ds 7zip X Xaw3d a52 aac aalib accessibility acl acpi ada aiglx aim aimextras aio akode alsa amarok amd amr ansi ao aotuv apache2 asf asterisk async athena atk atlas atm auctex audiofile autoipd automount avahi avalon bash-completion bdf beagle berkdb bidi big-tables bigpatch bind-mysql bl blas blender-game bonobo branding browserplugin buttons bzip2 c++ c3p0 cacheemu cairo calendar caps catalogs ccache cdda cddb cdf cdio cdparanoia cdr cdrom cegui cflags cgi chm chroot clamav clamd cle266 clearcase cli clisp cluster clvm cman concurrentmodphp cp1251 cpdflib cracklib crypt css cups curl curlwrappers cvs cvsgraph cxx dbase dbus dbx dga dhcp dict dio directfb divx4linux djbfft djvu dmi dnd doc double-precision dri dts dv dvb dvd dvdr dvdread dvi dxr3 dynagraph dynamic eap-tls ecc editor edl eds emacs emacs-w3 emf enca encode epiphany erandom esd evo examples exif expat exscalibar extraengine extrafilters extras f90 faad fam fame fbcon fbdev ffmpeg fftw firefox flac flash fltk font-server fontconfig foomaticdb fortran fortran95 fpx freetds freetype freewnn ft fuse galago gb gcj gd gdbm gecko-sdk geometry ggi gif gimp gimpprint ginac gkrellm glep glgd glib glibc-omitfp glitz glut glx gmail gmailtimestamps gml gmp gnome gnuplot gnustep gnutls gpg2-experimental gphoto2 gpm graphviz gs gsl gsm gstreamer gstreamer010 gtalk gtk gtk2 gtkhtml guile gulm gzip hal haskell hddtemp howl html http httpd icon iconv icu id3 idea idn ieee1394 imagemagick imap imlib irda ithreads jack jack-tmpfs java jbig jikes jingle jmx jpeg jpeg2k js justify kde kdehiddenvisibility kdepim kexi kqemu ladspa lame lapack lcd lcms ldap leim lesstif libcaca libclamav libnotify libsamplerate libvisual linuxthreads-tls live lm_sensors logrotate lzo mad mailwrapper math max-idx-128 mbox mbrola md5sum mhash mikmod milter mime ming mixer mjpeg mmap mmx mmxext mng modplug mono mopac7 motif mozcalendar mozdevelop mozilla mozsvg mp3 mp3rtp mp4 mp4live mpe mpeg mpeg2 mpeg4 mpi mpi_njtree mplayer mpqc msdfs msession mtp mudflap mule musepack music mysql mysqli mythtv nas nautilus ncurses neXt netboot netjack new-clx nextaw nfs nls no-old-linux nptl nptlonly nsplugin numeric oav objc objc++ odbc odk offensive ogg oggvorbis onaccess openal openbabel openexr opengl osc overlays pam pam_chroot pam_console pam_timestamp parse-clocks pascal paste64 pch pcre pda pdf pdfkit perforce perl pertty php physfs pic plotting plotutils png portaudio posix povray ppds prelude preview-latex profile pulseaudio pwdb pygrub python qt3 qt3support qt4 quicktime rar rdesktop readline real reflection reiserfs resolvconf rle romio rpc rplay rrdcgi rss rtc ruby samba sasl scanner screen script sdk sdl sendfile sendmail sensord server session skey slang slp smime smp sms sndfile softmmu sound sounds sox speedo speex spell spl sql sqlite sqlite3 srp srvdir sse sse-filters ssl stroke subversion svg svga swat swig sysfs syslog sysvipc szip t1lib tcl tcltk tcpd tetex tga theora threads threadsonly tidy tiff timidity tk toolbar tools transcode truetype ucs2 uim uml unicode urandom usb userlocales utempter utf8 v4l v4l2 vcd vcdimager videos vidix visualization voice vorbis vorbis-psy vst win32codecs winbind wma wma123 wmf wxgtk1 wxwindows x264 x86 xanim xcb xchatdccserver xchattext xcomposite xemacs xface xine xml xml2 xmldoclet xmlreader xmlrpc xmlwriter xorg xosd xpm xprint xrandr xscreensaver xv xvid yv12 zeroconf zip zlib" ALSA_CARDS="cmipci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="ru en" USERLAND="GNU" VIDEO_CARDS="fbdev vesa radeon" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_RSYNC_EXTRA_OPTS
As I said before, please try compiling with "-O2 -march=<....>" ONLY and report back if it still fails. Thanks, Markus
Looks like that this bug CFLAGS/CXXFLAGS related only... blas can be compilled with -O2 -march=<cpu> -mtune=<cpu> but not with -O3
I don't think -O3 is the problem (it works fine for me on a large number of different boxes). I suspect the cullprit is "-ftree-vectorize".
Fails for me on amd64 too, but for another reason I think..: . . . x86_64-pc-linux-gnu-strip --strip-debug /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libatlas.a chmod 644 /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libatlas.a x86_64-pc-linux-gnu-ranlib /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libatlas.a libtool: install: warning: remember to run `libtool --finish /usr/lib' cd gentoo/libf77blas.a ; \ libtool --mode=link --tag=CC cc -lpthread -lgfortran -o libblas.la ../libs/libatlas.la *.lo -rpath /usr/lib64/blas/atlas; \ rm -f .libs/libblas.so.0.0.0; \ cc --shared .libs/*.o -lpthread -lgfortran /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libatlas.so -Wl,-soname -Wl,libblas.so.0 -o .libs/libblas.so.0.0.0; \ libtool --mode=install install -s libblas.la /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs /bin/sh: line 0: cd: gentoo/libf77blas.a: No such file or directory libtool: link: `*.lo' is not a valid libtool object gcc: .libs/*.o: No such file or directory libtool: install: `libblas.la' is not a valid libtool archive Try `libtool --help --mode=install' for more information. make[1]: *** [libblas.so] Error 1 make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build' make: *** [shared-strip] Error 2 !!! ERROR: sci-libs/blas-atlas-3.7.24 failed. Call stack: ebuild.sh, line 1611: Called dyn_compile ebuild.sh, line 968: Called qa_call 'src_compile' environment, line 3758: Called src_compile blas-atlas-3.7.24.ebuild, line 100: Called die !!! failed to build shared libraries !!! If you need support, post the topmost build error, and the call stack if relevant. !!! A complete build log is located at '/var/log/portage/sci-libs:blas-atlas-3.7.24:20070126-081423.log'. Portage 2.1.2-r4 (default-linux/amd64/2006.0, gcc-4.1.1, glibc-2.5-r0, 2.6.19-gentoo-r2 x86_64) ================================================================= System uname: 2.6.19-gentoo-r2 x86_64 AMD Athlon(tm) 64 Processor 3000+ Gentoo Base System version 1.12.9 Timestamp of tree: Fri, 26 Jan 2007 04:50:01 +0000 distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] ccache version 2.4 [enabled] dev-java/java-config: 1.3.7, 2.0.31-r3 dev-lang/python: 2.4.4 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: 2.4-r6 dev-util/confcache: 0.4.2-r1 sys-apps/sandbox: 1.2.18.1 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.4_p6, 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.17 sys-devel/gcc-config: 1.3.14 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.19.2-r1 ACCEPT_KEYWORDS="amd64 ~amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=athlon64 -O2 -pipe -fno-ident -fomit-frame-pointer" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/java-config/vms/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c" CXXFLAGS="-march=athlon64 -O2 -pipe -fno-ident -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict" GENTOO_MIRRORS="http://ftp.du.se/pub/os/gentoo http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo" LANG="en_US.UTF-8" LC_ALL="en_US.UTF-8" LINGUAS="en sv" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_EXTRA_OPTS="--exclude-from=/etc/portage/rsync_excludes" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/usr/portage/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /usr/local/xgl-coffee /usr/portage/local/layman/vmware" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="X aac acpi aim alsa amd64 amr apache2 avahi avi bash-completion beagle berkdb bitmap-fonts bluetooth browserplugin cairo calendar canvas cdparanoia cdr cli console cracklib crypt cups dbus dga dio directfb divx divx4linux dlloader doc dri dts dvd dvdr dvdread eds emboss encode exif fbcon fbdev ffmpeg fftw firefox foomaticdb fortran gdbm gif glade glibc-omitfp glitz glx gnome gphoto2 gpm gstreamer gtk gtk2 hal http iconv icq id3 imagemagick imlib ipv6 isdnlog jabber java javascript jpeg kdrive keyboard lame lzw lzw-tiff mad matroska mime mono mouse mozsvg mp3 mp4 mp4live mpeg msn mysql ncurses nls nptl nptlonly nsplugin nv nvidia obex offensive ogg oggvorbis opengl oscar pam pcre pdf perl player png pppd python qt3 qt4 quicktime readline realmedia reflection rtc ruby samba sdl seamonkey session spell spl sqlite3 ssl svg tcpd tga theora threads tiff truetype truetype-fonts type1-fonts unicode usb userlocales v4l v4l2 vesa vmmouse vmware vorbis wmf wmp x264 xcomposite xml xorg xpm xscreensaver xv xvid xvmc yahoo zlib zsh-completion" ALSA_CARDS="emu10k1 via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse vmmouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en sv" USERLAND="GNU" VIDEO_CARDS="nv nvidia vesa vmware" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS
(In reply to comment #11) > Fails for me on amd64 too, but for another reason I think..: > . Yes, different reason:) I suspect there was some timing issue somewhere in between and atlas' build system failed to terminate and happily continued compiling with some of the libs now missing. I'd need to see the complete captured output of the emerge up to this point if possible. Since this might be a pretty large file, is there a chance you could post it somewhere? Thanks, Markus
Thanks for taking a look at this Markus. The log is about 20mb and I've uploaded it here: http://www.acc.umu.se/~cm/sci-libs:blas-atlas-3.7.24:20070126-081423.log If you're on a slow connection I can zip it. Thanks, Claes
Hi Claes, Thanks for the output! I grepped through it and it looks like the following is relevant. -------------- SNIP ----------------------------------- FATAL: can't create .libs/: Is a directory make[5]: *** [ATL_zreftrmvUNU.o] Error 1 make[5]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/src/blas/reference/level2' make[4]: *** [zrefblas2] Error 2 ------------------------------------------------------- Unfortunately, I am not quite sure what causes this. Assuming you have enough space on your disk could you try compiling it with "-j1" and see if that helps. Also, your output indicates that your machine has some sort of CPU throttling enabled. In this case atlas can not do a very good job of optimizing and you may obtain a very badly optimized library. Please turn throttling off during blas-atlas compilation. cheers, Markus
Thanks a lot for the input. I've changed to the Performance Speed Governor and set -j1, recompiling now. I'll see what happens, but I guess it will take a few hours. /Claes
No success with -j1, unfortunately. It fails in the exact same place. I'm guessing that the log is almost identical, but if you care to look you can find it at: http://www.acc.umu.se/~cm/sci-libs:blas-atlas-3.7.24:20070127-160733.log Maybe some of my use-flags are broken, or my filesysytem. I can't really figure it out.. :-/ Regards, Claes
I don't think the error is related to your use flags and/or filesystem but probably some problem with blas-atlas' build system. Hard to say from the logs. Does the stable version compile for you!? cheers, Markus
I just retried with blas-atlas-3.7.11 and the same make.conf: . . . /bin/sh: line 0: cd: gentoo/libf77blas.a: No such file or directory libtool: link: `*.lo' is not a valid libtool object gcc: .libs/*.o: No such file or directory libtool: install: `libblas.la' is not a valid libtool archive Try `libtool --help --mode=install' for more information. make[1]: *** [libblas.so] Error 1 make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.11/work/ATLAS' make: *** [shared-strip] Error 2 !!! ERROR: sci-libs/blas-atlas-3.7.11 failed. Call stack: ebuild.sh, line 1611: Called dyn_compile ebuild.sh, line 968: Called qa_call 'src_compile' environment, line 3744: Called src_compile blas-atlas-3.7.11.ebuild, line 132: Called die !!! Failed to build shared libraries !!! If you need support, post the topmost build error, and the call stack if relevant. !!! A complete build log is located at '/var/log/portage/sci-libs:blas-atlas-3.7.11:20070129-053348.log'. Fails exactly in the same way. Guess that means I have something borked on my system, even though all other programs compile just fine. The build-log can be found here: http://www.acc.umu.se/~cm/sci-libs:blas-atlas-3.7.11:20070129-053348.log
Could you maybe try without ccache, just to rule that out as well. Thanks, Markus
Hey, sorry for the slow reply. Did a recompile without ccache and it still fails in exactly the same way. gcc: .libs/*.o: No such file or directory libtool: install: `libblas.la' is not a valid libtool archive Try `libtool --help --mode=install' for more information. make[1]: *** [libblas.so] Error 1 make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build' make: *** [shared-strip] Error 2 !!! ERROR: sci-libs/blas-atlas-3.7.24 failed. Call stack: ebuild.sh, line 1611: Called dyn_compile ebuild.sh, line 968: Called qa_call 'src_compile' environment, line 3759: Called src_compile blas-atlas-3.7.24.ebuild, line 100: Called die
After staring at this for some more it actually looks as if libtool is choking when creating ATL_cgemvNc_b1.o, since it compiles the pic objects via -o .libs/ instead of -o .libs/ATL_cgemvNc_b1.o which obviously fails. Why this happens I don't know. What version of libtool do you have installed? Could you possibly try re-emerging libtool and try again!? Thanks, Markus
I have libtool-1.5.22 installed. Just re-emerged it, then did a revdep-rebuild again, which didn't update anything. I'll restart a blas-atlas build now. If it fails, maybe I should try with -fPIC or so. Thank you :-)
Hey, getting somewhere. It fails at another point now. Really wonder what was wrong with libtools. Anyway: . . make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build' >>> Source compiled. --------------------------- ACCESS VIOLATION SUMMARY --------------------------- LOG FILE = "/var/log/sandbox/sandbox-sci-libs_-_blas-atlas-3.7.24-16987.log" mkdir: /.libs -------------------------------------------------------------------------------- root@tyst> ~ as-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.la install .libs/libcblas.a /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-strip --strip-debug /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a chmod 644 /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-ranlib /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a libtool: install: warning: remember to run `libtool --finish /usr/lib64/blas/atlas' make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build' >>> Source compiled. --------------------------- ACCESS VIOLATION SUMMARY --------------------------- LOG FILE = "/var/log/sandbox/sandbox-sci-libs_-_blas-atlas-3.7.24-16987.log" mkdir: /.libs -------------------------------------------------------------------------------- root@tyst> root@tyst> ~ s-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.la install .libs/libcblas.a /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-strip --strip-debug /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a chmod 644 /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-ranlib /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a libtool: install: warning: remember to run `libtool --finish /usr/lib64/blas/atlas' make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build' >>> Source compiled. --------------------------- ACCESS VIOLATION SUMMARY --------------------------- LOG FILE = "/var/log/sandbox/sandbox-sci-libs_-_blas-atlas-3.7.24-16987.log" mkdir: /.libs -------------------------------------------------------------------------------- root@tyst> rroot@tyst> ~ -3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.la install .libs/libcblas.a /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-strip --strip-debug /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a chmod 644 /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-ranlib /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a libtool: install: warning: remember to run `libtool --finish /usr/lib64/blas/atlas' make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build' >>> Source compiled. --------------------------- ACCESS VIOLATION SUMMARY --------------------------- LOG FILE = "/var/log/sandbox/sandbox-sci-libs_-_blas-atlas-3.7.24-16987.log" mkdir: /.libs -------------------------------------------------------------------------------- root@tyst> rrroot@tyst> ~ .24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.la install .libs/libcblas.a /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-strip --strip-debug /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a chmod 644 /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-ranlib /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a libtool: install: warning: remember to run `libtool --finish /usr/lib64/blas/atlas' make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build' >>> Source compiled. --------------------------- ACCESS VIOLATION SUMMARY --------------------------- LOG FILE = "/var/log/sandbox/sandbox-sci-libs_-_blas-atlas-3.7.24-16987.log" mkdir: /.libs -------------------------------------------------------------------------------- root@tyst> rrrootroot@tyst> ~ gentoo/libs && { ln -s -f libcblas.so.0.0.0 libcblas.so || { rm -f libcblas.so && ln -s libcblas.so.0.0.0 libcblas.so; }; }) install .libs/libcblas.lai /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.la install .libs/libcblas.a /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-strip --strip-debug /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a chmod 644 /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a x86_64-pc-linux-gnu-ranlib /usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build/gentoo/libs/libcblas.a libtool: install: warning: remember to run `libtool --finish /usr/lib64/blas/atlas' make[1]: Leaving directory `/usr/portage/tmp/portage/sci-libs/blas-atlas-3.7.24/work/ATLAS/gentoo-build' >>> Source compiled. --------------------------- ACCESS VIOLATION SUMMARY --------------------------- LOG FILE = "/var/log/sandbox/sandbox-sci-libs_-_blas-atlas-3.7.24-16987.log" mkdir: /.libs -------------------------------------------------------------------------------- root@tyst> The log can be found here, as usually: http://www.acc.umu.se/~cm/sci-libs:blas-atlas-3.7.24:20070202-142549.log I'll try to compile again, but this time with sandbox disabled.
Hmm.. Or maybe not recompile with that.. Why is it trying to do "mkdir: /.libs" Feels like it should be ./libs Anyway, I'll look on it on sunday.
Yeah, it looks like libtool is doing something weird and better not turn off the sandbox :) Your logs show that this time gentoo/libf77blas.a is properly created but libtool chokes once and tries creating /.libs instead of ./libs. Quite strange and I am not sure what causes this. Markus
I'm also encountering compilation problems (ACCEPT_KEYWORDS="~x86") was enabled: CANNOT GET TIMINGS IN TOLERANCE, EXITING!! N=5000, tim=2.342918e-04 N=5000, tim=2.236422e-04 N=5000, tim=3.088392e-04 N=5000, tim=2.875399e-04 N=5000, tim=2.023429e-04 N=5000, tim=2.662407e-04 N=5000, tim=2.023429e-04 N=5000, tim=2.555911e-04 N=5000, tim=2.236422e-04 N=5000, tim=2.342918e-04 make[8]: *** [zdotcase] Error 11 make[8]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/blas/level1' make[8]: Entering directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/blas/level1' rm -f zdot.c zdot.o cp /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//tune/blas/level1/DOT/cdot2p24_x1y1.c zdot.c i686-pc-linux-gnu-gcc -DL2SIZE=4194304 -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/include -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//include -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_PIII -DATL_CPUMHZ=730 -DATL_SSE1 -DATL_GAS_x8632 -O2 -march=i686 -pipe -m32 -DDCPLX -c zdot.c i686-pc-linux-gnu-gcc -DL2SIZE=4194304 -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/include -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//include -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_PIII -DATL_CPUMHZ=730 -DATL_SSE1 -DATL_GAS_x8632 -O2 -march=i686 -pipe -m32 -o xzdot zdottime.o \ ATL_zdot_stub.o zdot.o \ /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/sysinfo/time.o -lm /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/bin/ATLrun.sh /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/blas/level1 xzdot -n 5000 -f res/zDOT2_a2b2x1y1 N=5000, tim=2.129925e-04 N=5000, tim=2.129925e-04 N=5000, tim=2.023429e-04 N=5000, time=2.094427e-04, mflop=190.983051 N=5000, incX=1, incY=1, mflop = 190.983051 make[8]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/blas/level1' make[8]: Entering directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/blas/level1' rm -f zdot.c zdot.o cp /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//tune/blas/level1/DOT/cdot1_x0y0.c zdot.c i686-pc-linux-gnu-gcc -DL2SIZE=4194304 -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/include -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//include -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_PIII -DATL_CPUMHZ=730 -DATL_SSE1 -DATL_GAS_x8632 -O2 -march=i686 -pipe -m32 -DDCPLX -c zdot.c i686-pc-linux-gnu-gcc -DL2SIZE=4194304 -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/include -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//include -I/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_PIII -DATL_CPUMHZ=730 -DATL_SSE1 -DATL_GAS_x8632 -O2 -march=i686 -pipe -m32 -o xzdot zdottime.o \ ATL_zdot_stub.o zdot.o \ /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/sysinfo/time.o -lm /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/bin/ATLrun.sh /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/blas/level1 xzdot -n 5000 -f res/zDOT1_a2b2x1y1 N=5000, tim=2.236422e-04 N=5000, tim=2.129925e-04 N=5000, tim=2.236422e-04 N=5000, time=2.200923e-04, mflop=181.741935 N=5000, incX=1, incY=1, mflop = 181.741935 make[8]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/blas/level1' NO GENERAL CASE SURVIVED!! ABORTING!! ID incX incY alpha beta ROUT ==== ==== ==== ===== ==== ============= 1 0 0 2 2 cdot1_x0y0.c 2 1 1 2 2 cdot2p24_x1y1.c ID incX incY alpha beta ROUT ==== ==== ==== ===== ==== ============= 1 0 0 2 2 cdot1_x0y0.c 2 1 1 2 2 cdot2p24_x1y1.c incX incY alpha beta ID ROUTINE ==== ==== ===== ==== ==== ================== 0 0 2 2 -1 UNKNOWN 1 1 2 2 -1 UNKNOWN TIM: make zdotcase N=5000 urout=cdot1_x0y0.c fout="-f res/zDOT1_a2b2x1y1" opt="" TIM: make zdotcase N=5000 urout=cdot2p24_x1y1.c fout="-f res/zDOT2_a2b2x1y1" opt="" TIM: make zdotcase N=5000 urout=cdot1_x0y0.c fout="-f res/zDOT1_a2b2x1y1" opt="" make[7]: *** [zinstall_dot] Error 255 make[7]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/tune/blas/level1' make[6]: *** [Make_zdot] Error 2 make[6]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/src/blas/level1' make[5]: *** [zgen] Error 2 make[5]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/src/blas/level1' make[4]: *** [zlib] Error 2 make[4]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/src/blas/level1' make[3]: *** [lib.grd] Error 2 make[3]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/src/auxil' make[2]: *** [IStage1] Error 2 make[2]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/bin' ERROR 418 DURING CACHESIZE SEARCH!!. CHECK INSTALL_LOG/Stage1.log FOR DETAILS. make[2]: Entering directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/bin' cd /var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/..//bin ; make error_report make[3]: Entering directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/bin' make[3]: *** No rule to make target `error_report'. Stop. make[3]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/bin' make[2]: *** [error_report] Error 2 make[2]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build/bin' cat: ../../CONFIG/error.txt: No such file or directory cat: ../../CONFIG/error.txt: No such file or directory make[1]: *** [build] Error 255 make[1]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.24/work/ATLAS/gentoo-build' make: *** [build] Error 2 !!! ERROR: sci-libs/blas-atlas-3.7.24 failed. Call stack: ebuild.sh, line 1546: Called dyn_compile ebuild.sh, line 937: Called src_compile blas-atlas-3.7.24.ebuild, line 97: Called die !!! make failed !!! If you need support, post the topmost build error, and the call stack if relevant.
emerge --info: Portage 2.1.1-r2 (default-linux/x86/2006.1, gcc-4.1.1, glibc-2.4-r4, 2.6.17-gentoo-r8 i686) ================================================================= System uname: 2.6.17-gentoo-r8 i686 Intel(R) Pentium(R) III Mobile CPU 1066MHz Gentoo Base System version 1.12.6 Last Sync: Sun, 04 Feb 2007 09:50:01 +0000 ccache version 2.4 [enabled] app-admin/eselect-compiler: [Not Present] dev-java/java-config: 1.3.7, 2.0.31 dev-lang/python: 2.4.3-r4 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: 2.4-r6 dev-util/confcache: [Not Present] sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.16.1-r3 sys-devel/gcc-config: 1.3.14 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.17-r2 ACCEPT_KEYWORDS="x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=i686 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/java-config/vms/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c" CXXFLAGS="-O2 -march=i686 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig ccache collision-protect distlocks metadata-transfer sandbox sfperms strict" GENTOO_MIRRORS="http://ftp.belnet.be/mirror/rsync.gentoo http://www.ibiblio.org/pub/Linux/distributions/gentoo" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="x86 NTP X aac alsa alsa_cards_maestro3 alsa_pcm_plugins_adpcm alsa_pcm_plugins_alaw alsa_pcm_plugins_asym alsa_pcm_plugins_copy alsa_pcm_plugins_dmix alsa_pcm_plugins_dshare alsa_pcm_plugins_dsnoop alsa_pcm_plugins_empty alsa_pcm_plugins_extplug alsa_pcm_plugins_file alsa_pcm_plugins_hooks alsa_pcm_plugins_iec958 alsa_pcm_plugins_ioplug alsa_pcm_plugins_ladspa alsa_pcm_plugins_lfloat alsa_pcm_plugins_linear alsa_pcm_plugins_meter alsa_pcm_plugins_mulaw alsa_pcm_plugins_multi alsa_pcm_plugins_null alsa_pcm_plugins_plug alsa_pcm_plugins_rate alsa_pcm_plugins_route alsa_pcm_plugins_share alsa_pcm_plugins_shm alsa_pcm_plugins_softvol berkdb bitmap-fonts cdparanoia cdr cli cracklib crypt cups directfb dlloader dri dvd dvdread elibc_glibc emacs esd firefox fortran gdbm gif gnome gphoto2 gpm gstreamer gtk hal iconv input_devices_evdev input_devices_keyboard input_devices_mouse ipv6 isdnlog java jpeg jpeg2k kernel_linux lcd_devices_bayrad lcd_devices_cfontz lcd_devices_cfontz633 lcd_devices_glk lcd_devices_hd44780 lcd_devices_lb216 lcd_devices_lcdm001 lcd_devices_mtxorb lcd_devices_ncurses lcd_devices_text libg++ midi mozbranding mp3 mpeg msn ncurses nls nptl nptlonly nsplugin pam pcmcia pcre pdf perl png ppds pppd python quicktime readline reflection session spl ssl tcpd tetex truetype-fonts type1-fonts udev unicode usb userland_GNU video_cards_apm video_cards_ark video_cards_ati video_cards_chips video_cards_cirrus video_cards_cyrix video_cards_dummy video_cards_fbdev video_cards_glint video_cards_i128 video_cards_i740 video_cards_i810 video_cards_imstt video_cards_mga video_cards_neomagic video_cards_nsc video_cards_nv video_cards_rendition video_cards_s3 video_cards_s3virge video_cards_savage video_cards_siliconmotion video_cards_sis video_cards_sisusb video_cards_tdfx video_cards_tga video_cards_trident video_cards_tseng video_cards_v4l video_cards_vesa video_cards_vga video_cards_via video_cards_vmware video_cards_voodoo win32codecs xine xinerama xorg xvid zlib" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS
(In reply to comment #26) > > CANNOT GET TIMINGS IN TOLERANCE, EXITING!! > > N=5000, tim=2.342918e-04 > N=5000, tim=2.236422e-04 > N=5000, tim=3.088392e-04 > N=5000, tim=2.875399e-04 > N=5000, tim=2.023429e-04 > N=5000, tim=2.662407e-04 > N=5000, tim=2.023429e-04 > N=5000, tim=2.555911e-04 > N=5000, tim=2.236422e-04 > N=5000, tim=2.342918e-04 > make[8]: *** [zdotcase] Error 11 Hi Steven, This can, e.g., happen if you run CPU intensive things in the background while atlas is trying to get its timings straight. Make sure that you have CPU throttling disabled and try keeping the CPU load low while emerging atlas and simply try again a few more time. This has occasionally happened to me in the past as well. Best, Markus
Finally got blas-atlas to install but I still don't know what the problem was. I sync:ed and updated everything, then compiled a new kernel and rebooted. Tried again and now it worked. (Unfortunately I forgot to turn off the dynamic cpu-throtling). Anyway, thanks for looking at this before! /Claes
Hi Claes, Great! Something on your system was messed up and probably fixed itself after syncing and updating. Please don't forget to re-compile blas-atlas without CPU throttling, otherwise you're likely stuck with badly optimized blas libraries. I'll close this bug since all of the issues reported seem to be addressed from my point of view. Thanks, Markus
