Initial ebuild for the package hapcluster (http://www.daimi.au.dk/~mailund/HapCluster/index.html) another tool for linkage disequilibrium mapping. Example files are available on the above page. Reproducible: Always Steps to Reproduce: 1. Save ebuild to /usr/local/portage/sci-biology/hapcluster 2. # ebuild /usr/local/portage/sci-biology/hapcluster/hapcluster-1.2.0-r1.ebuild 3. Add package to /etc/portage/package.keywords 4. # emerge hapcluster Actual Results: Actual Results: Builds and installs fine, no problems running software. Expected Results: Actual Results: Builds and installs fine, no problems running software.
Created attachment 106151 [details] Initial ebuild
Created attachment 106153 [details] ChangeLog for initial ebuild of hapcluster
(this is an automated message based on filtering criteria that matched this bug) 'EBUILD' is in the KEYWORDS which should mean that there is a ebuild attached to this bug. This bug is assigned to maintainer-wanted which means that it is not in the main tree. Heuristics show that no Gentoo developer has commented on your ebuild. Hello, The Gentoo Team would like to firstly thank you for your ebuild submission. We also apologize for not being able to accommodate you in a timely manner. There are simply too many new packages. Allow me to use this opportunity to introduce you to Gentoo Sunrise. The sunrise overlay[1] is a overlay for Gentoo which we allow trusted users to commit to and all users can have ebuilds reviewed by Gentoo devs for entry into the overlay. So, the sunrise team is suggesting that you look into this and submit your ebuild to the overlay where even *you* can commit to. =) Because this is a mass message, we are also asking you to be patient with us. We anticipate a large number of requests in a short time. Thanks, On behalf of the Gentoo Sunrise Team, Jeremy. [1]: http://www.gentoo.org/proj/en/sunrise/ [2]: http://overlays.gentoo.org/proj/sunrise/wiki/SunriseFaq
Taking bug.
This has been in progress for some time (3.5 years). HapCluster is now up to version 2.3.0 and I see that one of the dependencies snpfilter is maintained in portage although Andrey (who took this bug is no longer involved with maintenance of snpfilter according to the ChangeLog). I don't use HapCluster anymore myself (moved away from statistical genetics) but attach a revised ebuild that compiles and installs fine for me.
Created attachment 366950 [details] hapcluster-2.3.0.ebuild
