if i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -I.. -Wall -I/usr/X11R6/include -DUNIX -DRINGHOME="\"/usr/share/xdrawchem/\"" -DXDC_SERVER=\"www.xdrawchem.org\" -I/usr/include/openbabel-2.0 -g -I/usr/qt/3/include -g -O2 -march=i686 -pipe -MT textshapedialog.moc.o -MD -MP -MF ".deps/textshapedialog.moc.Tpo" -c -o textshapedialog.moc.o textshapedialog.moc.cpp; \ then mv -f ".deps/textshapedialog.moc.Tpo" ".deps/textshapedialog.moc.Po"; else rm -f ".deps/textshapedialog.moc.Tpo"; exit 1; fi /bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -g -I/usr/qt/3/include -g -O2 -march=i686 -pipe -o xdrawchem application.o application_ring.o arrow.o biotools.o bond.o bondedit.o boshcp.o bracket.o cdx2cdxml.o cdxml_reader.o charsel.o chemdata.o chemdata_cdx.o chemdata_cdxml.o chemdata_cml.o chemdata_edit.o chemdata_mdl.o chemdata_rw.o chemdata_rxn.o chemdata_tools.o chemdata_xdc.o chemdata_xml.o crings_dialog.o curvearrow.o drawable.o fixeddialog.o graphdialog.o graphwidget.o helpwindow.o main.o molecule.o molecule_1h_nmr.o molecule_smiles.o molecule_sssr.o molecule_tools_1.o molecule_tools_2.o molinfodialog.o myfiledialog.o netaccess.o netchoosedialog.o netdialog.o pagesetupdialog.o peptidebuilder.o previewwidget.o render2d.o render2d_draw.o render2d_event.o render2d_print.o render2d_select.o render2d_text.o ringdialog.o sdg.o smilesdialog.o symbol.o text.o textshapedialog.o to3d.o xdc_toolbutton.o xml_cml.o xml_reader.o ioiface.o application_ob.o chemdata_event.o molecule_obmol.o tooldialog.o ngw.o tool_1h_nmr.o tool_13c_nmr.o tool_ir.o gobject.o tool_2d3d.o xruler.o dyk.o retro.o application.moc.o graphwidget.moc.o render2d.moc.o arrow.moc.o helpwindow.moc.o ringdialog.moc.o bondedit.moc.o http.moc.o smilesdialog.moc.o bond.moc.o molecule.moc.o symbol.moc.o bracket.moc.o molinfodialog.moc.o text.moc.o chemdata.moc.o myfiledialog.moc.o tool_13c_nmr.moc.o crings_dialog.moc.o netaccess.moc.o tool_1h_nmr.moc.o curvearrow.moc.o netchoosedialog.moc.o tool_2d3d.moc.o drawable.moc.o netdialog.moc.o tooldialog.moc.o dyk.moc.o ngw.moc.o tool_ir.moc.o fixeddialog.moc.o pagesetupdialog.moc.o xdc_toolbutton.moc.o gobject.moc.o peptidebuilder.moc.o xruler.moc.o graphdialog.moc.o previewwidget.moc.o charsel.moc.o biotools.moc.o textshapedialog.moc.o -L/usr/qt/3/lib -lqt -LNONE -lXext -lX11 -lm -lSM -lICE -ldl -ljpeg -lXft -lopenbabel -L/usr/qt/3/lib -lqt -LNONE -lXext -lX11 -lm -lSM -lICE -ldl -ljpeg ../libtool: line 1803: cd: NONE: No such file or directory libtool: link: cannot determine absolute directory name of `NONE' make[2]: *** [xdrawchem] Error 1 make[2]: Leaving directory `/var/tmp/portage/xdrawchem-1.9.9/work/xdrawchem-1.9.9/xdrawchem' make[1]: *** [all-recursive] Error 1 make[1]: Leaving directory `/var/tmp/portage/xdrawchem-1.9.9/work/xdrawchem-1.9.9' make: *** [all] Error 2 !!! ERROR: sci-chemistry/xdrawchem-1.9.9 failed. Gentoo Base System version 1.12.5 Portage 2.1.1 (default-linux/x86/2006.1, gcc-4.1.1, glibc-2.4-r3, 2.6.16.16 i686) ================================================================= System uname: 2.6.16.16 i686 AMD Athlon(tm) 64 Processor 3200+ Last Sync: Sat, 21 Oct 2006 17:00:01 +0000 ccache version 2.3 [disabled] app-admin/eselect-compiler: [Not Present] dev-java/java-config: [Not Present] dev-lang/python: 2.4.3-r4 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: 2.3 dev-util/confcache: [Not Present] sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.9.6-r2 sys-devel/binutils: 2.16.1-r3 sys-devel/gcc-config: 1.3.13-r4 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.17-r1 ACCEPT_KEYWORDS="x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=i686 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc" CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/terminfo" CXXFLAGS="-O2 -march=i686 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks metadata-transfer sandbox sfperms strict" GENTOO_MIRRORS="ftp://212.219.56.134/sites/www.ibiblio.org/gentoo/ ftp://ftp.snt.utwente.nl/pub/os/linux/gentoo" LINGUAS="" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="x86 berkdb bitmap-fonts cli cracklib crypt cups dlloader dri elibc_glibc fortran gdbm gpm input_devices_evdev input_devices_keyboard input_devices_mouse ipv6 isdnlog kernel_linux libg++ ncurses nls nptl nptlonly pam pcre perl ppds pppd python readline reflection session spl ssl tcpd truetype-fonts type1-fonts udev unicode userland_GNU video_cards_apm video_cards_ark video_cards_ati video_cards_chips video_cards_cirrus video_cards_cyrix video_cards_dummy video_cards_fbdev video_cards_glint video_cards_i128 video_cards_i740 video_cards_i810 video_cards_imstt video_cards_mga video_cards_neomagic video_cards_nsc video_cards_nv video_cards_rendition video_cards_s3 video_cards_s3virge video_cards_savage video_cards_siliconmotion video_cards_sis video_cards_sisusb video_cards_tdfx video_cards_tga video_cards_trident video_cards_tseng video_cards_v4l video_cards_vesa video_cards_vga video_cards_via video_cards_vmware video_cards_voodoo xorg zlib" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, MAKEOPTS, PORTAGE_RSYNC_EXTRA_OPTS
Since this is a really stale bug because no devs have taken any action on it, please reopen if it's still a problem. I have 1.9.9 installed right now so I apparently didn't hit it, and I'm presuming it's fixed unless informed otherwise.