... ATL_ztrmv_scalLNN_aX.o ATL_ztrmv_scalLNU_an1.o ATL_ztrmv_scalUNN_aX.o ATL_ztrmv_scalUNU_an1.o ATL_ztrputL_b0.o ATL_ztrputL_b1.o ATL_ztrputL_bX.o ATL_ztrputL_bXi0.o ATL_ztrputL_bn1.o ATL_ztrputU_b0.o ATL_ztrputU_b1.o ATL_ztrputU_bX.o ATL_ztrputU_bXi0.o ATL_ztrputU_bn1.o ATL_ztrscal.o ATL_ztrsm.o ATL_ztrsmLLCN.o ATL_ztrsmLLCU.o ATL_ztrsmLLNN.o ATL_ztrsmLLNU.o ATL_ztrsmLLTN.o ATL_ztrsmLLTU.o ATL_ztrsmLUCN.o ATL_ztrsmLUCU.o ATL_ztrsmLUNN.o ATL_ztrsmLUNU.o ATL_ztrsmLUTN.o ATL_ztrsmLUTU.o ATL_ztrsmRLCN.o ATL_ztrsmRLCU.o ATL_ztrsmRLNN.o ATL_ztrsmRLNU.o ATL_ztrsmRLTN.o ATL_ztrsmRLTU.o ATL_ztrsmRUCN.o ATL_ztrsmRUCU.o ATL_ztrsmRUNN.o ATL_ztrsmRUNU.o ATL_ztrsmRUTN.o ATL_ztrsmRUTU.o ATL_ztrsv.o ATL_ztrsvLC.o ATL_ztrsvLCN.o ATL_ztrsvLCU.o ATL_ztrsvLH.o ATL_ztrsvLHN.o ATL_ztrsvLHU.o ATL_ztrsvLN.o ATL_ztrsvLNN.o ATL_ztrsvLNU.o ATL_ztrsvLT.o ATL_ztrsvLTN.o ATL_ztrsvLTU.o ATL_ztrsvUC.o ATL_ztrsvUCN.o ATL_ztrsvUCU.o ATL_ztrsvUH.o ATL_ztrsvUHN.o ATL_ztrsvUHU.o ATL_ztrsvUN.o ATL_ztrsvUNN.o ATL_ztrsvUNU.o ATL_ztrsvUT.o ATL_ztrsvUTN.o ATL_ztrsvUTU.o ATL_zupKBmm10_1_1_b0.o ATL_zupKBmm10_1_1_b1.o ATL_zupKBmm10_1_1_bX.o ATL_zupKBmm11_1_1_b0.o ATL_zupKBmm11_1_1_b1.o ATL_zupKBmm11_1_1_bX.o ATL_zupKBmm12_1_1_b0.o ATL_zupKBmm12_1_1_b1.o ATL_zupKBmm12_1_1_bX.o ATL_zupKBmm13_1_1_b0.o ATL_zupKBmm13_1_1_b1.o ATL_zupKBmm13_1_1_bX.o ATL_zupKBmm14_1_1_b0.o ATL_zupKBmm14_1_1_b1.o ATL_zupKBmm14_1_1_bX.o ATL_zupKBmm15_1_1_b0.o ATL_zupKBmm15_1_1_b1.o ATL_zupKBmm15_1_1_bX.o ATL_zupKBmm16_1_1_b0.o ATL_zupKBmm16_1_1_b1.o ATL_zupKBmm16_1_1_bX.o ATL_zupKBmm17_1_1_b0.o ATL_zupKBmm17_1_1_b1.o ATL_zupKBmm17_1_1_bX.o ATL_zupKBmm18_1_1_b0.o ATL_zupKBmm18_1_1_b1.o ATL_zupKBmm18_1_1_bX.o ATL_zupKBmm19_1_1_b0.o ATL_zupKBmm19_1_1_b1.o ATL_zupKBmm19_1_1_bX.o ATL_zupKBmm1_1_1_b0.o ATL_zupKBmm1_1_1_b1.o ATL_zupKBmm1_1_1_bX.o ATL_zupKBmm20_1_1_b0.o ATL_zupKBmm20_1_1_b1.o ATL_zupKBmm20_1_1_bX.o ATL_zupKBmm21_1_1_b0.o ATL_zupKBmm21_1_1_b1.o ATL_zupKBmm21_1_1_bX.o ATL_zupKBmm22_1_1_b0.o ATL_zupKBmm22_1_1_b1.o ATL_zupKBmm22_1_1_bX.o ATL_zupKBmm23_1_1_b0.o ATL_zupKBmm23_1_1_b1.o ATL_zupKBmm23_1_1_bX.o ATL_zupKBmm24_1_1_b0.o ATL_zupKBmm24_1_1_b1.o ATL_zupKBmm24_1_1_bX.o ATL_zupKBmm25_1_1_b0.o ATL_zupKBmm25_1_1_b1.o ATL_zupKBmm25_1_1_bX.o ATL_zupKBmm26_1_1_b0.o ATL_zupKBmm26_1_1_b1.o ATL_zupKBmm26_1_1_bX.o ATL_zupKBmm27_1_1_b0.o ATL_zupKBmm27_1_1_b1.o ATL_zupKBmm27_1_1_bX.o ATL_zupKBmm28_1_1_b0.o ATL_zupKBmm28_1_1_b1.o ATL_zupKBmm28_1_1_bX.o ATL_zupKBmm29_1_1_b0.o ATL_zupKBmm29_1_1_b1.o ATL_zupKBmm29_1_1_bX.o ATL_zupKBmm2_1_1_b0.o ATL_zupKBmm2_1_1_b1.o ATL_zupKBmm2_1_1_bX.o ATL_zupKBmm30_1_1_b0.o ATL_zupKBmm30_1_1_b1.o ATL_zupKBmm30_1_1_bX.o ATL_zupKBmm31_1_1_b0.o ATL_zupKBmm31_1_1_b1.o ATL_zupKBmm31_1_1_bX.o ATL_zupKBmm32_1_1_b0.o ATL_zupKBmm32_1_1_b1.o ATL_zupKBmm32_1_1_bX.o ATL_zupKBmm33_1_1_b0.o ATL_zupKBmm33_1_1_b1.o ATL_zupKBmm33_1_1_bX.o ATL_zupKBmm34_1_1_b0.o ATL_zupKBmm34_1_1_b1.o ATL_zupKBmm34_1_1_bX.o ATL_zupKBmm35_1_1_b0.o ATL_zupKBmm35_1_1_b1.o ATL_zupKBmm35_1_1_bX.o ATL_zupKBmm36_1_1_b0.o ATL_zupKBmm36_1_1_b1.o ATL_zupKBmm36_1_1_bX.o ATL_zupKBmm37_1_1_b0.o ATL_zupKBmm37_1_1_b1.o ATL_zupKBmm37_1_1_bX.o ATL_zupKBmm38_1_1_b0.o ATL_zupKBmm38_1_1_b1.o ATL_zupKBmm38_1_1_bX.o ATL_zupKBmm39_1_1_b0.o ATL_zupKBmm39_1_1_b1.o ATL_zupKBmm39_1_1_bX.o ATL_zupKBmm3_1_1_b0.o ATL_zupKBmm3_1_1_b1.o ATL_zupKBmm3_1_1_bX.o ATL_zupKBmm40_1_1_b0.o ATL_zupKBmm40_1_1_b1.o ATL_zupKBmm40_1_1_bX.o ATL_zupKBmm41_1_1_b0.o ATL_zupKBmm41_1_1_b1.o ATL_zupKBmm41_1_1_bX.o ATL_zupKBmm42_1_1_b0.o ATL_zupKBmm42_1_1_b1.o ATL_zupKBmm42_1_1_bX.o ATL_zupKBmm43_1_1_b0.o ATL_zupKBmm43_1_1_b1.o ATL_zupKBmm43_1_1_bX.o ATL_zupKBmm44_1_1_b0.o ATL_zupKBmm44_1_1_b1.o ATL_zupKBmm44_1_1_bX.o ATL_zupKBmm45_1_1_b0.o ATL_zupKBmm45_1_1_b1.o ATL_zupKBmm45_1_1_bX.o ATL_zupKBmm46_1_1_b0.o ATL_zupKBmm46_1_1_b1.o ATL_zupKBmm46_1_1_bX.o ATL_zupKBmm47_1_1_b0.o ATL_zupKBmm47_1_1_b1.o ATL_zupKBmm47_1_1_bX.o ATL_zupKBmm48_1_1_b0.o ATL_zupKBmm48_1_1_b1.o ATL_zupKBmm48_1_1_bX.o ATL_zupKBmm49_1_1_b0.o ATL_zupKBmm49_1_1_b1.o ATL_zupKBmm49_1_1_bX.o ATL_zupKBmm4_1_1_b0.o ATL_zupKBmm4_1_1_b1.o ATL_zupKBmm4_1_1_bX.o ATL_zupKBmm50_1_1_b0.o ATL_zupKBmm50_1_1_b1.o ATL_zupKBmm50_1_1_bX.o ATL_zupKBmm51_1_1_b0.o ATL_zupKBmm51_1_1_b1.o ATL_zupKBmm51_1_1_bX.o ATL_zupKBmm52_1_1_b0.o ATL_zupKBmm52_1_1_b1.o ATL_zupKBmm52_1_1_bX.o ATL_zupKBmm53_1_1_b0.o ATL_zupKBmm53_1_1_b1.o ATL_zupKBmm53_1_1_bX.o ATL_zupKBmm54_1_1_b0.o ATL_zupKBmm54_1_1_b1.o ATL_zupKBmm54_1_1_bX.o ATL_zupKBmm55_1_1_b0.o ATL_zupKBmm55_1_1_b1.o ATL_zupKBmm55_1_1_bX.o ATL_zupKBmm5_1_1_b0.o ATL_zupKBmm5_1_1_b1.o ATL_zupKBmm5_1_1_bX.o ATL_zupKBmm6_1_1_b0.o ATL_zupKBmm6_1_1_b1.o ATL_zupKBmm6_1_1_bX.o ATL_zupKBmm7_1_1_b0.o ATL_zupKBmm7_1_1_b1.o ATL_zupKBmm7_1_1_bX.o ATL_zupKBmm8_1_1_b0.o ATL_zupKBmm8_1_1_b1.o ATL_zupKBmm8_1_1_bX.o ATL_zupKBmm9_1_1_b0.o ATL_zupKBmm9_1_1_b1.o ATL_zupKBmm9_1_1_bX.o ATL_zupKBmm_b0.o ATL_zupKBmm_b1.o ATL_zupKBmm_bX.o ATL_zupMBmm0_14_0_b0.o ATL_zupMBmm0_14_0_b1.o ATL_zupMBmm0_14_0_bX.o ATL_zupMBmm0_1_0_b0.o ATL_zupMBmm0_1_0_b1.o ATL_zupMBmm0_1_0_bX.o ATL_zupMBmm_b0.o ATL_zupMBmm_b1.o ATL_zupMBmm_bX.o ATL_zupNBmm0_1_0_b0.o ATL_zupNBmm0_1_0_b1.o ATL_zupNBmm0_1_0_bX.o ATL_zupNBmm_b0.o ATL_zupNBmm_b1.o ATL_zupNBmm_bX.o x86_64-pc-linux-gnu-ranlib .libs/libatlas.a creating libatlas.la (cd .libs && rm -f libatlas.la && ln -s ../libatlas.la libatlas.la) install .libs/libatlas.so.0.0.0 /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs/libatlas.so.0.0.0 x86_64-pc-linux-gnu-strip --strip-unneeded /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs/libatlas.so.0.0.0 (cd /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs && { ln -s -f libatlas.so.0.0.0 libatlas.so.0 || { rm -f libatlas.so.0 && ln -s libatlas.so.0.0.0 libatlas.so.0; }; }) (cd /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs && { ln -s -f libatlas.so.0.0.0 libatlas.so || { rm -f libatlas.so && ln -s libatlas.so.0.0.0 libatlas.so; }; }) install .libs/libatlas.lai /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs/libatlas.la install .libs/libatlas.a /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs/libatlas.a x86_64-pc-linux-gnu-strip --strip-debug /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs/libatlas.a chmod 644 /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs/libatlas.a x86_64-pc-linux-gnu-ranlib /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs/libatlas.a libtool: install: warning: remember to run `libtool --finish /usr/lib' cd gentoo/libf77blas.a ; \ libtool --mode=link --tag=CC /usr/bin/gcc -lpthread -lgfortran -o libblas.la ../libs/libatlas.la *.lo \ -rpath /usr/lib64/blas/atlas; \ rm -f .libs/libblas.so.0.0.0; \ /usr/bin/gcc --shared .libs/*.o -lpthread -lgfortran /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs/libatlas.so -Wl,-soname -Wl,libblas.so.0 -o .libs/libblas.so.0.0.0; \ libtool --mode=install install -s libblas.la /var/tmp/portage/blas-atlas-3.7.11/work/ATLAS/gentoo/libs /bin/sh: line 0: cd: gentoo/libf77blas.a: No such file or directory libtool: link: `*.lo' is not a valid libtool object gcc: .libs/*.o: No such file or directory libtool: install: `libblas.la' is not a valid libtool archive Try `libtool --help --mode=install' for more information. make[1]: *** [libblas.so] Error 1 make[1]: Leaving directory `/var/tmp/portage/blas-atlas-3.7.11/work/ATLAS' make: *** [shared-strip] Error 2 !!! ERROR: sci-libs/blas-atlas-3.7.11 failed. Call stack: ebuild.sh, line 1546: Called dyn_compile ebuild.sh, line 937: Called src_compile blas-atlas-3.7.11.ebuild, line 132: Called die !!! Failed to build shared libraries !!! If you need support, post the topmost build error, and the call stack if relevant.
I use GCC 4.1.1 on my AMD64 and tried to compile it with: FEATURES="-ccache" interactive=1 emerge scipy (This depends on blas-atlas.) I think of a problem with Fortran.
I don't know what I have to answer in this interactive mode, I always chosed the default one. I think, this choose was wrong in the Fortran-part, because there was also a type of warning that the given command could not work. I tried it a bit different: ... F77 = 'g77 -O' doesn't seem to work for me. Enter 1 to enter a different F77, 0 to continue with none [1]: 1 I'm going to ask you for information about your Fortran 77 compiler. ATLAS does not need Fortran77 to build, so if you don't have a Fortran compiler, the install can still be completed successfully. However, ATLAS built without a Fortran compiler will not be callable from Fortran (i.e., the user should use the C interface), and we will not be able to do full testing, since some of the tester code is written in Fortran77. Enter f77 compiler [g77]: gfortran Enter F77 Flags [-O]: I'm going to ask you for information about your Fortran 77 compiler. ATLAS does not need Fortran77 to build, so if you don't have a Fortran compiler, the install can still be completed successfully. However, ATLAS built without a Fortran compiler will not be callable from Fortran (i.e., the user should use the C interface), and we will not be able to do full testing, since some of the tester code is written in Fortran77. F77 = 'gfortran -O' doesn't seem to work for me. Enter 1 to enter a different F77, 0 to continue with none [1]: So there seems to be no difference. But gfortran exists. ... Oh, I see the problem: hcompneu ~ # gfortran gcc-config error: gfortran wrapper: Unable to determine executable. CTARGET=x86_64-pc-linux-gnu exec=g77 I had a similar problem with x86_64-pc-linux-gnu-cc last time, so I think of a problem with my GCC-profile. I now chose gfortran-4.1.1 in the fortran-section and the script seems to accept this. I also chose to disable the Level 1 BLAS tune, don't know why I need it (or is this needed?).
Reopen with emerge --info, please.
I don't think there is any important additional information, but here it is: Portage 2.1.1 (default-linux/amd64/2006.1/desktop, gcc-4.1.1, glibc-2.4-r3, 2.6.17-suspend2-r5 x86_64) ================================================================= System uname: 2.6.17-suspend2-r5 x86_64 AMD Sempron(tm) Processor 2800+ Gentoo Base System version 1.12.4 Last Sync: Wed, 13 Sep 2006 10:00:05 +0000 ccache version 2.3 [enabled] app-admin/eselect-compiler: [Not Present] dev-lang/python: 2.3.5-r2, 2.4.3-r1 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: 2.3 dev-util/confcache: [Not Present] sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2 sys-devel/binutils: 2.15.92.0.2-r10, 2.16.1-r3 sys-devel/gcc-config: 1.3.13-r3 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=athlon64" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/" CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo" CXXFLAGS="-O2 -march=athlon64" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig ccache distlocks metadata-transfer parallel-fetch sandbox sfperms" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ ftp:///ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ ftp://ftp6.uni-erlangen.de/pub/mirrors/gentoo ftp://vlaai.snt.ipv6.utwente.nl/pub/os/linux/gentoo/" LINGUAS="de" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="amd64 64bit X a52 aac aalib acpi alsa ao apm artworkextra asf audiofile avi bash-completion bindist bitmap-fonts bittorrent browserplugin bzip2 cairo cdda cddb cdparanoia cdr cdrom cle266 corba crypt cups curl dbus dedicated dga divx4linux dlopen dlz dmi dmx dri dts dv dvd dvdr dvdread dvi ecc edl eds elibc_glibc encode erandom exif fame ffmpeg flac font-server foomaticdb fortran fping fpx freetts freetype ftp gcj gif gimp glade glibc-compat20 glibc-omitfp glitz glut glx gnome gnome-print gnutls gphoto2 gtk gtk2 guile hal howl i8x0 imagemagick imlib imlib2 input_devices_evdev input_devices_keyboard input_devices_mouse insecure-drivers ithreads jack java javascript jpeg jpeg2k kerberos kernel_linux krb4 lame lcms libcaca linguas_de linuxthreads-tls live logitech-mouse lzo mad matroska mikmod mjpeg mng mod modplug motif mozilla mp3 mp4 mpeg mpeg2 mpeg4 mplayer multislot musepack nautilus ncurses network nls nntp nptl nptlonly nsplugin nvidia nvram objc ogg oggvorbis openal opengl oss pam pdf png posix ppds profile python qt quicktime rar readline reiserfs rtc samba sblive scanner scp screen sdl sensord server session sharedext sharedmem silc silverxp speex spell ssl subtitles svg svgz t1lib tcltk teamarena tetex tga themes theora threads tiff transcode truetype truetype-fonts type1 type1-fonts unicode usb userland_GNU utf8 vcd video_cards_nv video_cards_nvidia vlm vorbis wma wma123 wmf wxwindows x264 xanim xcomposite xine xml2 xmms xorg xosd xpm xprint xrandr xscreensaver xsettings xv xvid zlib" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
(In reply to comment #0) > /bin/sh: line 0: cd: gentoo/libf77blas.a: No such file or directory This typically means that there was a problem while compiling one of the libf77blas.a objects. Sometimes atlas' code generator produces bad code that fails to compile (like on ppc). Grepping through the log files produced by atlas for errors should reveal what happened. If you post the relevant part I can have a look myself. If this is the case you will have to file a bug with upstream. In the meantime you could try the (currently masked) 3.7.17 ebuild. Best, Markus
It compiles now for me. The problem was simply the wrong Fortran-compiler, when I chose g77, it will not work, when I chose gfortran, it will also not work (because of this strange wrapper error; I think this is another problem with my gcc-profile: gfortran wrapper: Unable to determine executable), but when I chose gfortran-4.1.1, it worked for me. Therefore this must be the error, a stupid fault my myself. Perhaps there should be an additional check after the configure-process, which does some little checks. It could make it easier to see where the problem is and it could save some time. I am also always forced to use the interactive mode for configuring. This is disturbing sometimes (perhaps in an automated update-process). Regards, Albert
(In reply to comment #6) > It compiles now for me. Great:) Yeah, those gfortran wrapper issues are annoying. Strangely, I never experienced them on any of my systems. Hopefully, things will stabilize soon. Regarding your issue with the interactive configuration you could try the (currently masked) 3.7.17 version which has a completely reworked configure process. It works great for me! Best, Markus
