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Bug 141092 - problem with graphviz-2.6-r1 during configuration
Summary: problem with graphviz-2.6-r1 during configuration
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: PPC Linux
: High normal
Assignee: Gentoo Graphics Project
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2006-07-19 16:32 UTC by François Bissey
Modified: 2006-09-23 13:44 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
config.log (config.log,68.93 KB, text/plain)
2006-08-09 17:21 UTC, François Bissey
Details

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Description François Bissey 2006-07-19 16:32:23 UTC
Hi,

I tried to rebuild graphviz-2.6-r1 after the splitting of tcltk flags in tcl and
tk flags. 
The emerge process start fine and it goes through to configuration of graphiz.
Everything is normal until the config script hit ruby. At this stage I noticed
extreme slowness on my iMac G4 after inspection in top there were mainly 2
processes involved: yes which took a fair deal of cpu and configure which didn't
use that much cpu but at the time I noticed it was using 88% of my memory (I have
512MB of ram and 512MB of swap). Shortly after my computer froze. I tried to ssh
into from another computer but never got access to the machine.
On my second try I managed to kill the process before the machine froze. Third try was similar to the second one.

Here is my emerge info:
Portage 2.1-r1 (default-linux/ppc/ppc32/2006.1/G4, gcc-4.1.1, glibc-2.4-r3, 2.6.16-gentoo-r5 ppc)
=================================================================
System uname: 2.6.16-gentoo-r5 ppc 7450, altivec supported
Gentoo Base System version 1.6.15
ccache version 2.3 [enabled]
app-admin/eselect-compiler: [Not Present]
dev-lang/python:     2.3.5-r2, 2.4.3-r1
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     2.3
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2
sys-devel/binutils:  2.16.1-r3
sys-devel/gcc-config: 1.3.13-r3
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.11-r4
ACCEPT_KEYWORDS="ppc"
AUTOCLEAN="yes"
CBUILD="powerpc-unknown-linux-gnu"
CFLAGS="-O2 -mcpu=7450 -mtune=7450 -pipe -maltivec -mabi=altivec -frename-registers -fivopts -ftree-vectorize -fno-strict-aliasing"
CHOST="powerpc-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo"
CXXFLAGS="-O2 -mcpu=7450 -mtune=7450 -pipe -maltivec -mabi=altivec -frename-registers -fivopts -ftree-vectorize -fno-strict-aliasing"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict"
GENTOO_MIRRORS="ftp://ftp.vic.keypoint.com.au http://mirrors.tds.net/gentoo ftp://mirrors.tds.net/gentoo http://mirror.tucdemonic.org/gentoo/"
LC_ALL="en_GB.UTF-8"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage /usr/portage/local/layman/science"
SYNC="rsync://rsync.au.gentoo.org/gentoo-portage"
USE="ppc X a52 aac aalib alsa altivec arts asf audiofile berkdb bitmap-fonts bonobo bzip2 cairo cddb cdf cdparanoia cdr cli crypt cups curl dlloader dri dts dv dvd dvdr dvdread emboss encode esd expat f77 ffmepg fftw firefox flac foomaticdb fortran gdbm gif gmp gpm graphviz gs gstreamer gtk gtk2 gtkhtml hal idn ieee1394 imagemagick imlib imlib2 ipv6 isdnlog java jbig jpeg jpeg2k kde kdexdeltas lcms libg++ libwww live lzo mad mikmod mjpeg mng mp3 mp4 mpeg musepack musicbrainz ncurses netcdf network nls nptl nptlonly ogg openal openexr opengl oss pam pcre pdf pdflib perl png ppds pppd python qt qt3 qt4 quicktime rdesktop readline reflection ruby samba sdl session slang slp sndfile spell spl ssl svg szip tcl tcltk tcpd tetex theora tiff tk truetype truetype-fonts type1-fonts udev unicode usb vcd vorbis wmf xine xml xml2 xmms xorg xv xvid zeroconf zlib elibc_glibc input_devices_keyboard input_devices_mouse input_devices_evdev kernel_linux userland_GNU video_cards_fbdev video_cards_nv video_cards_vga"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LDFLAGS, LINGUAS, MAKEOPTS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Akos Ladanyi 2006-07-22 22:50:00 UTC
Happens here too (on amd64):

Portage 2.1-r1 (default-linux/amd64/2006.0, gcc-3.4.6, glibc-2.3.6-r4, 2.6.16-gentoo-r9 x86_64)
=================================================================
System uname: 2.6.16-gentoo-r9 x86_64 AMD Opteron(tm) Processor 246
Gentoo Base System version 1.6.15
distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled]
app-admin/eselect-compiler: [Not Present]
dev-lang/python:     2.4.2
dev-python/pycrypto: 2.0.1-r5
dev-util/ccache:     [Not Present]
dev-util/confcache:  [Not Present]
sys-apps/sandbox:    1.2.17
sys-devel/autoconf:  2.13, 2.59-r7
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2
sys-devel/binutils:  2.16.1-r3
sys-devel/gcc-config: 1.3.13-r3
sys-devel/libtool:   1.5.22
virtual/os-headers:  2.6.11-r2
ACCEPT_KEYWORDS="amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=k8 -pipe -O2"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/lib/X11/xkb /usr/lib64/mozilla/defaults/pref /usr/share/config"
CONFIG_PROTECT_MASK="/etc/env.d /etc/gconf /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c"
CXXFLAGS="-march=k8 -pipe -O2"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks metadata-transfer sandbox sfperms strict"
GENTOO_MIRRORS="ftp://ftp.nyx.hu/gentoo http://gentoo.ynet.sk/pub http://gentoo.inf.elte.hu/ http://distfiles.gentoo.org/"
LC_ALL="en_US.utf8"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="amd64 X a52 aac aalib accessibility acl acpi adns alsa apache2 apm arts audiofile avahi avi bash-completion berkdb bitmap-fonts bonobo bzip2 cairo cdparanoia cdr cjk cli crypt cscope ctype cups curl dba dbus directfb dlloader doc dri dts dv dvb dvd dvdr eds emacs emboss encode esd ethereal evo exif expat fam fbcon ffmpeg firefox flac font-server foomaticdb fortran ftp gd gdbm ggi gif glut gmp gnome gnutls gphoto2 gpm gstreamer gtk gtk2 gtkhtml guile hal idn imagemagick imap imlib ipv6 isdnlog java javascript jpeg junit kde kerberos lcms ldap libcaca libg++ libwww lzw lzw-tiff mad maildir matroska memlimit mikmod mng mono motif mp3 mpeg mysql nas ncurses nls nptl nptlonly nsplugin offensive ogg oggvorbis opengl oss pam pcre pda pdf pdflib perl php png posix ppds pppd python qt qt3 qt4 quicktime readline reflection ruby samba sasl sdl seamonkey session simplexml slang soap sockets socks5 speex spell spl sqlite ssl startup-notification svg tcl tcltk tcpd tetex theora tiff tk tokenizer truetype truetype-fonts type1-fonts udev unicode usb v4l vcd vorbis wmf xine xinerama xml xml2 xmms xorg xpm xsl xv xvid zlib elibc_glibc input_devices_keyboard input_devices_mouse kernel_linux userland_GNU video_cards_radeon video_cards_mach64 video_cards_r128"
Unset:  CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LDFLAGS, LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 2 François Bissey 2006-08-08 17:48:53 UTC
Hi again some more stuff about this bug. I did an emerge --newuse world last
night (to get hidden visibility into kde) and I had forgotten this graphviz bug.
In arriving this morning the ebuild had spitted the following message on the 
ebuild:

checking for ruby... ruby
/usr/lib/portage/bin/ebuild.sh: line 437:  7638 Killed                  ${CONFCACHE} ${CONFCACHE_ARG} ${TMP_CONFCACHE_DIR} "${ECONF_SOURCE}/configure" --prefix=/usr --host=${CHOST} --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib "$@" ${LOCAL_EXTRA_ECONF}

!!! Please attach the following file when filing a report to bugs.gentoo.org:
!!! /var/tmp/portage/graphviz-2.6-r1/work/graphviz-2.6/config.log

!!! ERROR: media-gfx/graphviz-2.6-r1 failed.
Call stack:
  ebuild.sh, line 1539:   Called dyn_compile
  ebuild.sh, line 939:   Called src_compile
  graphviz-2.6-r1.ebuild, line 44:   Called econf '--with-mylibgd' '--disable-dependency-tracking' '--disable-static' '--with-tclsh' '--with-tcl' '--with-tk' '--with-x'
  ebuild.sh, line 541:   Called die

!!! econf failed
!!! If you need support, post the topmost build error, and the call stack if relevant.

=================
I unfortunately erased the config log. I will regenerate it as soon as 
possible and attach it.
Comment 3 François Bissey 2006-08-09 17:21:18 UTC
Created attachment 93877 [details]
config.log
Comment 4 François Bissey 2006-09-11 16:02:03 UTC
Ok, yesterday graphviz-2.8 has been marked stable on ppc and it doesn't
suffer from this problem. Thus "solving" the bug after a fashion. 
Comment 5 Jakub Moc (RETIRED) gentoo-dev 2006-09-23 13:44:32 UTC
Closing then.