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Bug 138642 - version bump needed for sci-chemistry/molden to 4.4
Summary: version bump needed for sci-chemistry/molden to 4.4
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High enhancement (vote)
Assignee: Gentoo Chemistry-Related Packages
URL: http://www.cmbi.ru.nl/molden/molden.html
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2006-06-30 17:04 UTC by William Ames
Modified: 2006-10-02 18:51 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
GAMESS output file (H2O.log,76.42 KB, application/octet-stream)
2006-06-30 17:13 UTC, William Ames
Details
molden-4.4.ebuild (molden-4.4.ebuild,1.74 KB, text/plain)
2006-07-30 23:41 UTC, Jeffrey Gardner (RETIRED)
Details
molden-4.4-gfortran-patch.patch (molden-4.4-gfortran-patch.patch,1018 bytes, patch)
2006-07-30 23:42 UTC, Jeffrey Gardner (RETIRED)
Details | Diff

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Description William Ames 2006-06-30 17:04:01 UTC
There seems to be an error in the 4.3 version of molden that does not allow it to correctly read GAMESS-US (newest version, 2006-02-22) output files.  Version of GAMESS was installed using version in portage and tested with all tests passing using newly included checktst script ;).  The problem is specifically that 4.3 gives this error when loading a GAMESS-US output file

 ERROR reading GAMESS Basis set!

 ERROR reading GAMESS output file!

I have even tried this with the 4.3 binary that can be downloaded with the same results.  This error does not appear with the 4.4 binary and so must be an error with molden itself not the ebuild etc... but because 4.4 is out I will not submit a bug report to the molden devs unless it is decided that a version bump is to 4.4 is not needed or some such...
Comment 1 William Ames 2006-06-30 17:13:21 UTC
Created attachment 90578 [details]
GAMESS output file

Here is an example of a simple output that will not load properly in 4.3.  Just to be clear the error makes it so the "Dens. Mode" button is greyed out -> cannot view electron densities/orbitals.
Comment 2 Jeffrey Gardner (RETIRED) gentoo-dev 2006-07-30 23:41:33 UTC
Created attachment 93102 [details]
molden-4.4.ebuild

molden-4.4.ebuild
Comment 3 Jeffrey Gardner (RETIRED) gentoo-dev 2006-07-30 23:42:05 UTC
Created attachment 93103 [details, diff]
molden-4.4-gfortran-patch.patch
Comment 4 Jeffrey Gardner (RETIRED) gentoo-dev 2006-07-30 23:43:20 UTC
Try this ebuild and patch.
Comment 5 Toon Verstraelen 2006-10-02 03:13:16 UTC
Hi, thanks for the ebuild. It works fine here on my x86 box. I think it is safe to add this ebuild to the portage tree with the ~x86 keyword.
Comment 6 Markus Dittrich (RETIRED) gentoo-dev 2006-10-02 18:51:46 UTC
I've just bumped molden to version 4.4 in portage cvs.
I hope it works for everybody!

Best,
Markus