Yaml reports an extra file, not in its manifest. emerge -auvDN world These are the packages that I would merge, in order: Calculating world dependencies ...done! [ebuild U ] dev-perl/yaml-0.58 [0.53] USE="test% -minimal%" 0 kB Total size of downloads: 0 kB Do you want me to merge these packages? [Yes/No] >>> emerge (1 of 1) dev-perl/yaml-0.58 to / !!! Security Violation: A file exists that is not in the manifest. !!! File: files/digest-yaml-0.57 emerge info Portage 2.1_pre4-r1 (default-linux/x86/2005.1, gcc-3.4.5, glibc-2.3.6-r3, 2.6.15-gentoo-r5 i686) ================================================================= System uname: 2.6.15-gentoo-r5 i686 Intel(R) Pentium(R) 4 CPU 3.00GHz Gentoo Base System version 1.12.0_pre16 ccache version 2.4 [enabled] dev-lang/python: 2.4.2-r1 sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1 sys-devel/binutils: 2.16.1-r1 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.11-r3 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -mtune=prescott -march=prescott -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/env.d" CXXFLAGS="-O2 -mtune=prescott -march=prescott -pipe" DISTDIR="/home/gentoo/portage/distfiles" FEATURES="autoconfig candy ccache distlocks sandbox sfperms strict" GENTOO_MIRRORS="http://gentoo.osuosl.org/ http://gentoo.mirrors.pair.com/ http://distro.ibiblio.org/pub/linux/distributions/gentoo/ http://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ http://gentoo.chem.wisc.edu/gentoo/" LINGUAS="en-US" MAKEOPTS="-j2" PKGDIR="/home/gentoo/portage/packages" PORTAGE_TMPDIR="/home/gentoo/tmp" PORTDIR="/home/gentoo/portage" PORTDIR_OVERLAY="/home/gentoo/local/portage" SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage" USE="x86 7zip X X509 Xaw3d a52 aac aalib acl acpi activefilter ada aim aio alsa amarok amd amr aotuv apache2 apm arts artswrappersuid artworkextra asf asm asterisk async atlas auctex audiofile authdaemond automount avi bash-completion bcmath bcp bdf berkdb binfilter bitmap-fonts bjam bl blas blender-game bonobo boo bzip2 c++ cairo calendar cap caps ccache cdda cddb cdf cdio cdparanoia cdr cdrom cgi chm clanJavaScript clanVoice cli clisp cmucl commercial corba cpdflib cracklib crosscompile crypt cscope css ctype cups curl curlwrappers cvsgraph daap dba dbm dbus dbx dcc debugger dga dhcp dio directfb discard-path djvu dnd dpms dri dts dv dvd dvdr dvdread dynagraph ecc editor edl eds effects emboss emoticon encode enscript epson erandom esd examples exif expat extrafilters extraicons extramodules fame fat fbcon fbdev fbsplash ffmpeg fftw finger firefox fits flac flash flatfile fltk font-server fontconfig foomaticdb force-cgi-redirect fortran fpx freetts freetype ftp fuse gb gcc-libffi gcj gcl gd gdal gdbm geoip geos ggi gif gimp gimpprint ginac gitsendemail gkrellm glade glep glgd glitz glut glx gml gmp gmtfull gmthigh gmtsuppl gmttria gnome gnome-print gnomedb gnuplot gnutls gpgme gphoto2 gpm gps graphviz grass gs gsl gssapi gstreamer gtk gtk2 gtkhtml guile gzip hal haskell hddtemp hdf hdf5 hfs high-ints hlapi hou hpn html httpd i8x0 iconv icq id3 ide idea idn image imagemagick imap imlib imlib2 inifile inkjar input_devices_jamstudio input_devices_keyboard input_devices_mouse insecure-drivers insecure-savers ipv6 itcl jack jai jasper java javacomm javascript jbig jce jikes jimi jit jp2 jpeg jpeg2k junit jython kcal kde kdeenablefinal kdepim kdexdeltas kqemu ladcca lame lapack largeterminal latex lcms ldap libcaca libclamav libdsk libg++ libgda libsamplerate libwww live lm_sensors logitech-mouse logrotate logwatch lzo lzw mad mail maildir mailwrapper mapeditor maps math matroska mbrola md5sum mhash mikmod mime ming mixer mjpeg mmap mmx mmxext mng mod mopac7 motif mozilla moznocompose moznoirc moznomail mozsha1 mozsvg mp3 mp4live mpeg mpeg2 mpeg4 mplayer mpqc multiprocess multitarget musepack music musicbrainz mysql nas ncurses net netcdf network new-login nfs nls no-old-linux nocd nowin nptl nsplugin ntfs ntlm numarray numeric oav objc ocaml octave offensive ofx ogdi ogg oggvorbis openal openbabel openexr opengl osc oss pager pam parse-clocks pascal patented pcntl pcre pdf pdfkit pdflib pear perl php physfs pic player plotutils plugin png pnp pop portaudio posix postfix povray ppds print pyste python qemu-fast qhull qt quicktime quotas quotes rar rdesktop readline real remix rle rogue rpc rrdtool rss rtc ruby samba sasl sbcl scanner scp screen sdk sdl seti sftp shared sharedext sharedmem shorten shout skins slp smime smp sndfile sockets softmmu sou sounds speedo speex spell spl sql sqlite sse sse-filters sse2 ssl stencil-buffer stream subject-rewrite subp subtitles subversion suid svg svgz svn-mirror swat symlink sysfs syslog sysvipc szip t1lib tcltk tcpd test tetex tga theora thesaurus threads tidy tiff timidity tokenizer toolbar tools transcode truetype truetype-fonts type1 type1-fonts ucs2 ucs4 unicode urandom usb userlocales utf8 uudeview v4l v4l2 vcd vcdimager vfat video_cards_i810 video_cards_i830 video_cards_i915 videos vidix vim-with-x virus-scan visualization vlm voice vorbis webdav win32codecs wmf wordperfect wv wxwindows x264 xanim xatrix xface xforms xine xinetd xml xml2 xmldoclet xmms xosd xpm xprint xscreensaver xsl xslt xtended xv xvid xvmc yv12 zip zlib elibc_glibc kernel_linux linguas_en-US userland_GNU" Unset: ASFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, LANG, LC_ALL, LDFLAGS
should be cleared up by now, was in middle of removing 0.57 and committed a tad too fast :) please reopen if this isn't resolved on your next sync
