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Bug 115282 - texshade-1.12.ebuild (New Package)
Summary: texshade-1.12.ebuild (New Package)
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Default Assignee for New Packages
URL:
Whiteboard: sunrise suggested
Keywords: EBUILD
Depends on:
Blocks:
 
Reported: 2005-12-12 02:49 UTC by Mathias Weigt
Modified: 2018-06-07 18:26 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
texshade-1.12.ebuild (texshade-1.12.ebuild,830 bytes, text/plain)
2005-12-12 02:50 UTC, Mathias Weigt
Details

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Description Mathias Weigt 2005-12-12 02:49:38 UTC
This is an ebuild for Eric Beitz texshade package for LaTeX. It installs 
texshade.sty, ciliate.cod and standard.cod into the LaTeX path (needs teTex). 
 
From the authors homepage (http://homepages.uni-tuebingen.de/beitz/txe.html): 
"Setting alignments of nucleotides and peptides for publication or 
presentation purposes is usually a time consuming two-step process. First, a 
scientific software is used for the calculation of the alignment. This is done 
in a few minutes. Then, in order to highlight special sequence relationships 
and to label positions and regions of interest a second software with high 
output capability is needed.  
 Manipulating sequence alignments with standard word processing or graphics 
programs takes its time - often several hours - and simple layout changes such 
as rebreaking lines, say from 50 to 40 residues per line, elongate the working 
time considerably.  
 TeXshade is an alignment shading software completely written in TeX/LaTeX 
which can process multiple sequence alignments in the .MSF and the .ALN file 
format. It provides in addition to common shading algorithms special shading 
modes featuring functional aspects, e.g. charge or hydropathy, and a plenitude 
of commands for handling shading colors, text styles, labels, legends and even 
allows the user to define completely new shading modes. TeXshade combines 
highest flexibility and the habitual TeX output quality - with reasonable time 
expenditure." 

Reproducible: Always
Steps to Reproduce:
1.
2.
3.
Comment 1 Mathias Weigt 2005-12-12 02:50:39 UTC
Created attachment 74568 [details]
texshade-1.12.ebuild

first ebuild for the texshade package
Comment 2 Jeremy Olexa (darkside) (RETIRED) archtester gentoo-dev Security 2009-03-01 02:22:29 UTC
(this is an automated message based on filtering criteria that matched this bug)
'EBUILD' is in the KEYWORDS which should mean that there is a ebuild attached 
to this bug.
This bug is assigned to maintainer-wanted which means that it is not in the 
main tree.
Heuristics show that no Gentoo developer has commented on your ebuild.

Hello, The Gentoo Team would like to firstly thank you for your ebuild 
submission. We also apologize for not being able to accommodate you in a timely
manner. There are simply too many new packages.

Allow me to use this opportunity to introduce you to Gentoo Sunrise. The 
sunrise overlay[1] is a overlay for Gentoo which we allow trusted users to 
commit to and all users can have ebuilds reviewed by Gentoo devs for entry 
into the overlay. So, the sunrise team is suggesting that you look into this 
and submit your ebuild to the overlay where even *you* can commit to. =)

Because this is a mass message, we are also asking you to be patient with us. 
We anticipate a large number of requests in a short time. 

Thanks,
On behalf of the Gentoo Sunrise Team,
Jeremy.

[1]: http://www.gentoo.org/proj/en/sunrise/
[2]: http://overlays.gentoo.org/proj/sunrise/wiki/SunriseFaq