yesterday I've synced the portage tree and updating the system I've seen: >>> emerge (13 of 16) dev-perl/Apache-Test-1.27 to / >>> Previously fetched file: Apache-Test-1.27.tar.gz size ;-) >>> Previously fetched file: Apache-Test-1.27.tar.gz MD5 ;-) !!! Security Violation: A file exists that is not in the manifest. !!! File: files/digest-Apache-Test-1.27 !!! Fetch for /usr/portage/dev-perl/Apache-Test/Apache-Test-1.27.ebuild failed, continuing... I've done a new emerge sync this morning, 24 hour later, and the manifest still miss the file. So it seems it isn't a mirror propagation issue, but a missed commit of the manifest file. Reproducible: Always Steps to Reproduce: 1. 2. 3.
Fixed.