Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 114260 - openbabel / ghemical / xdrawchem conflict
Summary: openbabel / ghemical / xdrawchem conflict
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High normal
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on: 132835
Blocks:
  Show dependency tree
 
Reported: 2005-12-02 05:40 UTC by Patrick Kursawe (RETIRED)
Modified: 2006-05-14 11:53 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
new openbabel (openbabel-2.0.0.ebuild,853 bytes, text/plain)
2005-12-02 05:52 UTC, Patrick Kursawe (RETIRED)
Details
openbabel-2.0.0 with blocker for ghemical (openbabel-2.0.0.ebuild,655 bytes, text/plain)
2006-03-21 18:39 UTC, Jeffrey Gardner (RETIRED)
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Patrick Kursawe (RETIRED) gentoo-dev 2005-12-02 05:40:42 UTC
Current ~x86 ghemical requires openbabel 1 (not stated in DEPEND, but it fails
with openbabel 2), xdrawchem-1.9.9 requires openbabel 2. It would be quite a
PITA to install both openbabel versions parallel, I think. Ideas?
Comment 1 Patrick Kursawe (RETIRED) gentoo-dev 2005-12-02 05:52:28 UTC
Created attachment 73941 [details]
new openbabel

ebuild for openbabel-2.0.0
Comment 2 Patrick Kursawe (RETIRED) gentoo-dev 2005-12-02 05:57:19 UTC
for xdrawchem, just copy over the 1.9.8.ebuild and update the required openbabel
version to 2.0.0.
Comment 3 Donnie Berkholz (RETIRED) gentoo-dev 2005-12-02 07:03:59 UTC
Possibilities:
1) Slot openbabel
2) Make ghemical and xdrawchem block (doesn't make any sense, people want both)
3) Update ghemical to be compatible with openbabel-2
Comment 4 Donnie Berkholz (RETIRED) gentoo-dev 2005-12-02 07:57:45 UTC
I suppose a 4th options is moving (lib)ghemical 1.90 to ~arch, but it probably
shouldn't be going stable so I'd rather not do that.
Comment 5 Patrick Kursawe (RETIRED) gentoo-dev 2005-12-06 00:47:53 UTC
(In reply to comment #3)
> Possibilities:
> 1) Slot openbabel

Perhaps an idea for the library, but I don't like the idea of having two
parallel versions of the command line tools with symlinks to the currently used
version and all that stuff just for a package that is used for exactly _two_
other packages (IIRC).

> 2) Make ghemical and xdrawchem block (doesn't make any sense, people want both)
> 3) Update ghemical to be compatible with openbabel-2

Perhaps 2.5) make them block until ghemical is updated?
Comment 6 Donnie Berkholz (RETIRED) gentoo-dev 2005-12-06 00:57:39 UTC
(In reply to comment #5)
> Perhaps 2.5) make them block until ghemical is updated?

Even the latest development version, still not in portage (1.91), depends on
openbabel-1 so that might be a long time.

(http://www.uku.fi/~thassine/ghemical/download.html)
Comment 7 Jeffrey Gardner (RETIRED) gentoo-dev 2006-03-21 18:39:45 UTC
Created attachment 82829 [details]
openbabel-2.0.0 with blocker for ghemical

I'm working on an ebuild for gnome-chemistry-utils, which needs this package. I added a blocker for ghemical (which doesn't work on amd64 anyway).
Comment 8 Jean Bréfort 2006-05-04 08:57:38 UTC
ghemical-2.0.0 has been released and is compatible with openbabel-2.0.0 (preferably 2.0.1 since many bugs were fixed) and it works on amd64 :-)
Comment 9 Donald E. Curtis 2006-05-09 15:51:27 UTC
Please see my submitted ebuilds <a href="http://bugs.gentoo.org/show_bug.cgi?id=132835">Bug #132835</a>
Comment 10 Donnie Berkholz (RETIRED) gentoo-dev 2006-05-13 15:29:00 UTC
openbabel-2 and ghemical-2 are now committed, so the new xdrawchem can get added.
Comment 11 Donnie Berkholz (RETIRED) gentoo-dev 2006-05-14 11:53:35 UTC
Fixed.