emerge octave ends in a compilation failure looking for liboctinterp.so -L../liboctave -L../libcruft -L../src -Wl,-rpath -Wl,/usr/lib/octave-2.1.71 \ -loctinterp -loctave -lcruft \ -llapack -lcblas -lf77blas -latlas -lfftw3 -lreadline -lncurses -ldl -lmpi -lhdf5 -lz -lm -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4 -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4/../../.. -lz -lmpi -lhdf5 -lfrtbegin -lg2c -lm -lgcc_s ../src/liboctinterp.so: undefined reference to `MPI::Is_initialized()' ../src/liboctinterp.so: undefined reference to `PMPI::Comm::mpi_comm_map' ../src/liboctinterp.so: undefined reference to `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)' ../src/liboctinterp.so: undefined reference to `MPI::Op::Free()' ../src/liboctinterp.so: undefined reference to `op_intercept' ../src/liboctinterp.so: undefined reference to `PMPI::Intracomm::current_op' ../src/liboctinterp.so: undefined reference to `PMPI::Comm::mpi_err_map' collect2: ld returned 1 exit status make[2]: *** [octave] Error 1 Reproducible: Always Steps to Reproduce: 1.emerge octave 2. 3. Actual Results: Longer section of the out error code -march=pentium-m -O2 -pipe builtins.cc -o pic/builtins.o i686-pc-linux-gnu-g++ -c -fPIC -I. -I.. -I../liboctave -I../src -I../libcruft/misc -DHAVE_CONFIG_H -mieee-fp -Wall -W -Wshadow -march=pentium-m -O2 -pipe ops.cc -o pic/ops.o rm -f liboctinterp.so i686-pc-linux-gnu-g++ -shared -Wl,-soname -Wl,liboctinterp.so -o liboctinterp.so pic/Cell.o pic/bitfcns.o pic/c-file-ptr-stream.o pic/comment-list.o pic/cutils.o pic/data.o pic/debug.o pic/defaults.o pic/defun.o pic/dirfns.o pic/dynamic-ld.o pic/error.o pic/file-io.o pic/fn-cache.o pic/gripes.o pic/help.o pic/input.o pic/lex.o pic/load-save.o pic/ls-hdf5.o pic/ls-mat-ascii.o pic/ls-mat4.o pic/ls-mat5.o pic/ls-oct-ascii.o pic/ls-oct-binary.o pic/ls-utils.o pic/main.o pic/mappers.o pic/matherr.o pic/oct-fstrm.o pic/oct-hist.o pic/oct-iostrm.o pic/oct-map.o pic/oct-obj.o pic/oct-prcstrm.o pic/oct-procbuf.o pic/oct-stdstrm.o pic/oct-stream.o pic/oct-strstrm.o pic/oct-lvalue.o pic/pager.o pic/parse.o pic/pr-output.o pic/procstream.o pic/sighandlers.o pic/siglist.o pic/strcasecmp.o pic/strncase.o pic/strfns.o pic/symtab.o pic/syscalls.o pic/sysdep.o pic/token.o pic/toplev.o pic/unwind-prot.o pic/utils.o pic/variables.o pic/xdiv.o pic/xpow.o pic/ov-base.o pic/ov-ch-mat.o pic/ov-cs-list.o pic/ov-list.o pic/ov-re-mat.o pic/ov-cx-mat.o pic/ov-range.o pic/ov-scalar.o pic/ov-complex.o pic/ov-str-mat.o pic/ov-streamoff.o pic/ov-struct.o pic/ov-va-args.o pic/ov-colon.o pic/ov-bool-mat.o pic/ov-bool.o pic/ov-file.o pic/ov-cell.o pic/ov.o pic/ov-fcn.o pic/ov-builtin.o pic/ov-dld-fcn.o pic/ov-mapper.o pic/ov-usr-fcn.o pic/ov-fcn-handle.o pic/ov-fcn-inline.o pic/ov-typeinfo.o pic/ov-int8.o pic/ov-int16.o pic/ov-int32.o pic/ov-int64.o pic/ov-uint8.o pic/ov-uint16.o pic/ov-uint32.o pic/ov-uint64.o pic/pt.o pic/pt-arg-list.o pic/pt-assign.o pic/pt-bp.o pic/pt-binop.o pic/pt-cell.o pic/pt-check.o pic/pt-cmd.o pic/pt-colon.o pic/pt-const.o pic/pt-decl.o pic/pt-except.o pic/pt-exp.o pic/pt-fcn-handle.o pic/pt-id.o pic/pt-idx.o pic/pt-jump.o pic/pt-loop.o pic/pt-mat.o pic/pt-misc.o pic/pt-plot.o pic/pt-pr-code.o pic/pt-select.o pic/pt-stmt.o pic/pt-unop.o pic/op-b-b.o pic/op-b-bm.o pic/op-bm-b.o pic/op-bm-bm.o pic/op-cell.o pic/op-chm.o pic/op-cm-cm.o pic/op-cm-cs.o pic/op-cm-m.o pic/op-cm-s.o pic/op-cs-cm.o pic/op-cs-cs.o pic/op-cs-m.o pic/op-cs-s.o pic/op-fil-b.o pic/op-fil-bm.o pic/op-fil-cm.o pic/op-fil-cs.o pic/op-fil-m.o pic/op-fil-s.o pic/op-fil-lis.o pic/op-fil-rec.o pic/op-fil-str.o pic/op-list.o pic/op-m-cm.o pic/op-m-cs.o pic/op-m-m.o pic/op-m-s.o pic/op-range.o pic/op-s-cm.o pic/op-s-cs.o pic/op-s-m.o pic/op-s-s.o pic/op-str-m.o pic/op-str-s.o pic/op-str-str.o pic/op-streamoff.o pic/op-struct.o pic/op-int-concat.o pic/op-int-conv.o pic/op-double-conv.o pic/op-i8-i8.o pic/op-i16-i16.o pic/op-i32-i32.o pic/op-i64-i64.o pic/op-ui8-ui8.o pic/op-ui16-ui16.o pic/op-ui32-ui32.o pic/op-ui64-ui64.o pic/Array-os.o pic/Array-sym.o pic/Array-tc.o pic/octave.o pic/builtins.o pic/ops.o ../libcruft/blas-xtra/pic/xerbla.o -L../liboctave -loctave -L../libcruft -lcruft -lreadline -lncurses -ldl -lmpi -lhdf5 -lz -lm -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4 -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4/../../.. -lz -lmpi -lhdf5 -lfrtbegin -lg2c -lm -lgcc_s rm -f liboctinterp.so.2.1.71 ln -s liboctinterp.so liboctinterp.so.2.1.71 i686-pc-linux-gnu-gcc -c -I. -I.. -I../liboctave -I../src -I../libcruft/misc -DHAVE_CONFIG_H -mieee-fp -Wall -W -Wshadow -march=pentium-m -O2 -pipe main.c -o main.o i686-pc-linux-gnu-g++ -I. -I.. -I../liboctave -I../src -I../libcruft/misc -DHAVE_CONFIG_H -mieee-fp -Wall -W -Wshadow -march=pentium-m -O2 -pipe -rdynamic \ -L.. -fPIC -lz -o octave \ main.o \ -L../liboctave -L../libcruft -L../src -Wl,-rpath -Wl,/usr/lib/octave-2.1.71 \ -loctinterp -loctave -lcruft \ -llapack -lcblas -lf77blas -latlas -lfftw3 -lreadline -lncurses -ldl -lmpi -lhdf5 -lz -lm -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4 -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/3.4.4/../../.. -lz -lmpi -lhdf5 -lfrtbegin -lg2c -lm -lgcc_s ../src/liboctinterp.so: undefined reference to `MPI::Is_initialized()' ../src/liboctinterp.so: undefined reference to `PMPI::Comm::mpi_comm_map' ../src/liboctinterp.so: undefined reference to `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype const&), bool)' ../src/liboctinterp.so: undefined reference to `MPI::Op::Free()' ../src/liboctinterp.so: undefined reference to `op_intercept' ../src/liboctinterp.so: undefined reference to `PMPI::Intracomm::current_op' ../src/liboctinterp.so: undefined reference to `PMPI::Comm::mpi_err_map' collect2: ld returned 1 exit status make[2]: *** [octave] Error 1 make[2]: Leaving directory `/var/tmp/portage/octave-2.1.71/work/octave-2.1.71/src' make[1]: *** [src] Error 2 make[1]: Leaving directory `/var/tmp/portage/octave-2.1.71/work/octave-2.1.71' make: *** [all] Error 2 !!! ERROR: sci-mathematics/octave-2.1.71 failed. !!! Function src_compile, Line 61, Exitcode 2 !!! emake failed !!! If you need support, post the topmost build error, NOT this status message. *** Resuming merge... >>> emerge (1 of 31) sci-mathematics/octave-2.1.71 to / >>> md5 files ;-) octave-2.1.71.ebuild >>> md5 files ;-) octave-2.1.69.ebuild >>> md5 files ;-) octave-2.1.57-r1.ebuild >>> md5 files ;-) files/digest-octave-2.1.57-r1 >>> md5 files ;-) files/digest-octave-2.1.69 >>> md5 files ;-) files/digest-octave-2.1.71 >>> md5 src_uri ;-) octave-2.1.71.tar.bz2 Expected Results: successful emerge Gentoo Base System version 1.6.10 Portage 2.0.51.19 (default-linux/x86/2004.3, gcc-3.4.3-20050110, glibc-2.3.4.20050125-r1, 2.6.12-rc1 i686) ================================================================= System uname: 2.6.12-rc1 i686 Intel(R) Pentium(R) M processor 1500MHz Python: dev-lang/python-2.3.5 [2.3.5 (#1, Mar 4 2005, 11:11:02)] distcc 2.18.3 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] dev-lang/python: 2.3.5 sys-devel/autoconf: 2.59-r6, 2.13 sys-devel/automake: 1.7.9-r1, 1.8.5-r3, 1.5, 1.4_p6, 1.6.3, 1.9.5 sys-devel/binutils: 2.15.92.0.2-r7 sys-devel/libtool: 1.5.14 virtual/os-headers: 2.6.8.1-r4 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CFLAGS="-march=pentium-m -O2 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-march=pentium-m -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoaddcvs autoconfig ccache distlocks sandbox sfperms" GENTOO_MIRRORS="http://gentoo.osuosl.org/ ftp://distro.ibiblio.org/pub/Linux/distributions/gentoo/ ftp://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ ftp://gentoo.mirrors.pair.com/ http://mirror.tucdemonic.org/gentoo/ http://mirror.clarkson.edu/pub/distributions/gentoo/ http://mirror.datapipe.net/gentoo" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages/pentium-m" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage" USE="x86 X a52 acpi alsa atlas avi bash-completion berkdb bitmap-fonts blas bonobo cdda cddb cdf cdio cdparanoia cdr cdrom chroot clisp cmucl crypt cscope cups curl dba divx4linux dnd dts dv dvd dvdr dvdread edl eds emboss encode evms2 evo exif f2c faac faad fam ffmpeg fftw flac font-server foomaticdb fortran freetype gcj gd gdbm gif gimp gimpprint ginac gnome gnomedb gnuplot gphoto2 gpm gps gsl gstreamer gtk gtk2 gtkhtml guile hal hbci hdf hdf5 ieee1394 imagemagick imlib inkjar irda jack jack-tmpfs java javascript jikes joystick jp2 jpeg junit kerberos lapack latex lcd ldap libg++ libwww lirc mad makecheck matroska mikmod mime mmx mmx2 mng motif mozsvg mp3 mpeg mpeg4 mpi mplayer multicall mysql mythtv ncurses netcdf nls nptl nvidia nviz offensive ofx ogg oggvorbis openal opengl openssh pam pcmcia pcre pda pdf pdflib perl pic plotutils plugin png pnp posix ppds pthreads python qt quicktime readline real rtc samba scanner sdl shared sharedmem skey slang spell sse sse2 ssl stencil-buffer stream stroke svg svga tcltk tcpd tetex theora threads tiff timidity truetype truetype-fonts type1 type1-fonts usb v4l v4l2 vcd vlm vnc vorbis wifi wmf wxwindows xine xml xml2 xmms xosd xpm xprint xrandr xscreensaver xv xvid xvmc zlib" Unset: ASFLAGS, CBUILD, CTARGET, LANG, LC_ALL, LDFLAGS Gentoo Base System version 1.12.0_pre8 Portage 2.0.53_rc5 (default-linux/x86/2005.0, gcc-3.4.4, glibc-2.3.5-r2, 2.6.13-suspend2-r4 i686) ================================================================= System uname: 2.6.13-suspend2-r4 i686 Intel(R) Pentium(R) M processor 1500MHz distcc 2.18.3 i686-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] dev-lang/python: 2.3.5, 2.4.2 sys-apps/sandbox: 1.2.13 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1 sys-devel/binutils: 2.16.1 sys-devel/libtool: 1.5.20 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=pentium-m -O2 -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib/mozilla/defaults/pref /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/splash /etc/terminfo /etc/texmf/web2c /etc/env.d" CXXFLAGS="-march=pentium-m -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks sandbox sfperms strict" GENTOO_MIRRORS="http://gentoo.osuosl.org/ ftp://distro.ibiblio.org/pub/Linux/distributions/gentoo/ ftp://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ ftp://gentoo.mirrors.pair.com/ http://mirror.tucdemonic.org/gentoo/ http://mirror.clarkson.edu/pub/distributions/gentoo/ http://mirror.datapipe.net/gentoo" PKGDIR="/usr/portage/packages/pentium-m" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.namerica.gentoo.org/gentoo-portage" USE="x86 X a52 acpi alsa atlas avi bash-completion berkdb bitmap-fonts blas bonobo browserplugin cdda cddb cdf cdio cdparanoia cdr cdrom chroot clisp cmucl crypt cscope cups curl dba divx4linux dnd dts dv dvd dvdr dvdread edl eds emboss encode evms2 evo exif f2c faac faad fam fbsplash ffmpeg fftw firefox flac foomaticdb fortran freetype gcj gd gdbm gif gimp gimpprint ginac gnome gnomedb gnuplot gphoto2 gpm gps gsl gstreamer gtk gtk2 gtkhtml guile hal hbci hdf hdf5 ieee1394 imagemagick imlib inkjar irda jack jack-tmpfs java javascript jikes joystick jp2 jpeg junit kerberos lapack latex lcd ldap libg++ libwww lirc mad makecheck matroska mikmod mime mmx mmx2 mng motif mozilla mozsvg mp3 mpeg mpeg4 mpi mplayer multicall mysql mythtv ncurses netcdf nls nptl nsplugin ntfs nvidia nviz nvram offensive ofx ogg oggvorbis openal opengl openssh pam pcmcia pcre pda pdf pdflib perl pic plotutils plugin png pnp posix ppds pthreads python qt quicktime rar rdesktop readline real rhythmbox rtc samba scanner sdl shared sharedmem skey slang spell sse sse2 ssl stencil-buffer stream stroke svg svga tcltk tcpd tetex theora threads tiff timidity truetype truetype-fonts type1 type1-fonts usb v4l v4l2 vcd vlm vnc vorbis wifi win32codecs winbind wmf wxwindows xine xml xml2 xmms xosd xpm xprint xrandr xscreensaver xv xvid xvmc zlib userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS, MAKEOPTS
The emerge fails for me too on AMD64: . . ...-cs-rv.o pic/vx-cv-ccv.o pic/vx-cv-cs.o pic/vx-rv-crv.o pic/vx-rv-cs.o pic/vx-s-ccv.o pic/vx-s-crv.o pic/f2c-main.o pic/filemode.o pic/getopt.o pic/getopt1.o pic/lo-cieee.o pic/lo-cutils.o pic/mkdir.o pic/oct-getopt.o pic/rename.o pic/rmdir.o pic/strftime.o pic/strptime.o pic/tempname.o pic/tempnam.o pic/cmd-edit.o pic/cmd-hist.o pic/oct-rl-edit.o pic/oct-rl-hist.o pic/pathsearch.o pic/kpse-xfns.o -L../libcruft -L. -Wl,-rpath -Wl,/usr/lib64/octave-2.1.71 -lcruft -lfftw3 -lreadline -lreadline -lncurses -ldl -lm -L/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/../../../../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/../../.. -L/lib/../lib64 -L/usr/lib/../lib64 -lz -lfrtbegin -lg2c -lm -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/../../../../x86_64-pc-linux-gnu/bin/ld: warning: creating a DT_TEXTREL in object. /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/../../../../x86_64-pc-linux-gnu/bin/ld: pic/DASRT.o: relocation R_X86_64_PC32 against `std::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::basic_ostringstream(std::_Ios_Openmode)@@GLIBCXX_3.4' can not be used when making a shared object; recompile with -fPIC /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.4/../../../../x86_64-pc-linux-gnu/bin/ld: final link failed: Bad value collect2: ld returned 1 exit status distcc[29555] ERROR: compile (null) on localhost failed make[2]: *** [liboctave.so] Error 1 make[2]: Leaving directory `/usr/portage/tmp/portage/octave-2.1.71/work/octave-2.1.71/liboctave' make[1]: *** [liboctave] Error 2 make[1]: Leaving directory `/usr/portage/tmp/portage/octave-2.1.71/work/octave-2.1.71' make: *** [all] Error 2 !!! ERROR: sci-mathematics/octave-2.1.71 failed. !!! Function src_compile, Line 61, Exitcode 2 !!! emake failed ---------------------- emerge info --------------------- Portage 2.0.53_rc6 (default-linux/amd64/2005.1, gcc-3.4.4, glibc-2.3.5-r2, 2.6.13-gentoo-r3 x86_64) ================================================================= System uname: 2.6.13-gentoo-r3 x86_64 AMD Athlon(tm) 64 Processor 3000+ Gentoo Base System version 1.12.0_pre9 distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [enabled] ccache version 2.4 [enabled] dev-lang/python: 2.3.5, 2.4.2 sys-apps/sandbox: 1.2.13 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1 sys-devel/binutils: 2.16.1 sys-devel/libtool: 1.5.20 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="amd64 ~amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=athlon64 -O2 -pipe -ftracer -fno-ident" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib64/mozilla/defaults/pref /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-march=athlon64 -O2 -pipe -ftracer -fno-ident -fvisibility-inlines-hidden -fno-enforce-eh-specs" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig ccache distcc distlocks sandbox sfperms strict" GENTOO_MIRRORS="http://ftp.du.se/pub/os/gentoo http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo" LANG="en_US.UTF-8" LC_ALL="en_US.UTF-8" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/usr/portage/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /usr/local/gentopia" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="amd64 X acpi aim apache2 avi berkdb bitmap-fonts bluetooth browserplugin cairo calendar cdparanoia cdr crypt cups dga dio directfb doc dri dvd dvdr eds emboss encode exif fbcon ffmpeg fftw foomaticdb fortran gdbm gif glx gnome gphoto2 gpm gstreamer gtk gtk2 hal icq imagemagic imagemagick imlib ipv6 jabber java jpeg lzw lzw-tiff mime mozilla mp3 mpeg msn ncurses nls nptl nsplugin offensive ogg oggvorbis opengl oscar pam pdflib perl png python quicktime readline ruby samba sdl spell sqlite ssl svg tcpd theora tiff truetype truetype-fonts type1-fonts udev unicode usb userlocales vorbis wmf xml2 xpm xv xvid yahoo zlib userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LDFLAGS, LINGUAS
Alexander, It looks like octave fails to link to your MPI library. As far as I can see, the ebuild doesn't actually pull an MPI implementation for USE=mpi which probably needs to be fixed. Hence you likely have already an installed MPI version on your system that causes trouble, could you please post which one? Could you also please check if octave compiles for you with USE="-mpi".
Yes I have lam-mpi installed. And yes octave still fails to compile even with USE="-mpi"
After unemerging lam-mpi: emerge -C lam-mpi and setting the USE flags to "-mpi" Octave now compiles
Hmm, as I suspected, its a problem with MPI then! Would you be able to test if the stable octave/lam-mpi compiles and works ok for you, i.e. octave-2.1.69/lam-mpi-7.0.6? @claes: please try without distcc and if that doesn't work, file a separate bug since your problem is unrelated to Alexander's. Thanks!
Created attachment 72425 [details, diff] patch providing proper linkage against MPI Hi Alexander, The attached patch should hopefully fix the MPI linkage problems. Please give it a spin with USE=mpi.
Applied the ebuild patch and set MPI in the USE flags. And it's alive! Compiled cleanly and I have it running right now. Thanks!
Hi Alexander, Thanks for testing! The changes are now in portage-cvs (octave-2.1.71-r2.ebuild). Dear sparc team: I had to drop ~sparc from the ebuild for the time being. The sparc team needs to set the default virtual/mpi for sparc to sys-cluster/lam-mpi since the default sys-cluster/mpich isn't available on sparc. Thank you!
After changing sparc's default virtual/mpi to lam-mpi and readding ~sparc keyword to octave-2.1.71-r2, I am able to build octave-2.1.71-r2 with USE=mpi on sparc. Resulting interpreter is able to execute the little ebuild test successfully, at least: octave:1> y = [1 3 4 2 1 5 3 5 6 7 4 5 7 10 11 3]; octave:2> g = [1 1 1 1 1 1 1 1 2 2 2 2 2 3 3 3]; octave:3> anova(y,g); One-way ANOVA Table: Source of Variation Sum of Squares df Empirical Var ********************************************************* Between Groups 61.6375 2 30.8188 Within Groups 62.8000 13 4.8308 --------------------------------------------------------- Total 124.4375 15 Test Statistic f 6.3797 p-value 0.0117 Hence, sparc done.
Thanks Ferris! I am resolving the bug as fixed.
