I am so glad you do not package the java version of readseq, it is utter crap. However for completeness it may be appropriate to add it as an option, though I cannot imagine anyone in his/her right mind wanting to use it. Reproducible: Always Steps to Reproduce: 1. 2. 3. Portage 2.0.53_rc4 (default-linux/amd64/2005.0, gcc-3.4.4, glibc-2.3.5-r2, 2.6.13-gentoo-r2 x86_64) ================================================================= System uname: 2.6.13-gentoo-r2 x86_64 AMD Athlon(tm) 64 Processor 3500+ Gentoo Base System version 1.12.0_pre8 distcc 2.18.3 x86_64-pc-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] dev-lang/python: 2.3.5-r2, 2.4.2 sys-apps/sandbox: 1.2.13 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1 sys-devel/binutils: 2.15.92.0.2-r1, 2.16.1 sys-devel/libtool: 1.5.20 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="amd64 ~amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=athlon64 -O2 -pipe -nopie -fno-stack-protector -fno-stack-protector-all" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/env.d" CXXFLAGS="-march=athlon64 -O2 -pipe -nopie -fno-stack-protector -fno-stack-protector-all" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks sfperms strict" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="amd64 X alsa apache2 arts avi bash-completion berkdb bitmap-fonts bonobo bzlib cdr crypt cups curl dba dv dvdr dvdread eds emboss encode esd faad fam fame ffmpeg flac foomaticdb fortran gd gd-external gdbm ggi gif gimpprint gnome gpm gstreamer gtk gtk2 gtkhtml imagemagick imap imlib ipv6 jabber java jikes joystick jpeg junit kde kerberos ldap libwww lzw lzw-tiff mad mjpeg motif mozilla mp3 mpeg mysql ncurses nls nptl offensive ogg opengl pam pcre pdflib perl pic png pop ppds python qt quicktime readline ruby samba scanner sdk sdl session slang spell ssl svg tcltk tcpd tetex theora tiff truetype truetype-fonts type1-fonts unicode usb userlocales vorbis xine xinerama xml xml2 xmms xosd xpm xv zlib userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS, MAKEOPTS
(In reply to comment #0) > I am so glad you do not package the java version of readseq, it is utter crap. > However for completeness it may be appropriate to add it as an option, though I > cannot imagine anyone in his/her right mind wanting to use it. For a fun contrast, see bug 53730
Tested sci-biology/readseq-19930201 for ~amd64. Builds, loads and runs. Appears to function properly with a simple .msf gene sequence I found on the net. Tests good for ~amd64 Portage 2.0.51.22-r3 (default-linux/amd64/2005.1, gcc-3.4.4, glibc-2.3.5-r2, 2.6.14-gentoo x86_64) ================================================================= System uname: 2.6.14-gentoo x86_64 AMD Athlon(tm) 64 Processor 3500+ Gentoo Base System version 1.6.13 dev-lang/python: 2.3.5-r2, 2.4.2 sys-apps/sandbox: 1.2.12 sys-devel/autoconf: 2.13, 2.59-r6 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1 sys-devel/binutils: 2.15.92.0.2-r10 sys-devel/libtool: 1.5.20 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib64/mozilla/defaults/pref /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks multilib-strict sandbox sfperms strict" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/Linux/distributions/gentoo" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/etc/portage/overlay" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="amd64 alsa avi berkdb bitmap-fonts bzip2 crypt cups eds emboss encode expat foomaticdb fortran gdbm gif gpm gstreamer gtk2 imlib ipv6 java jpeg ldap lzw lzw-tiff mp3 mpeg ncurses nls opengl pam pdflib perl png python quicktime readline ruby sdl spell ssl tcpd tiff truetype-fonts type1-fonts udev usb userlocales xpm xv zlib userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS
Marked ~amd64. Thanks for testing.
