Attached is the new ebuild for MAFFT. It's intended to be placed inside sci-biology. License = mafft found in their webpage: http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/ "This software is freely available for academic use, without any warranty. Commercial distribution of this software, in whole or in part, requires prior agreement with the authors." -------------------- ebuild start here -------------------- # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ inherit toolchain-funcs DESCRIPTION="General purpose multiple sequence alignment program for DNA and proteins using Fast Fourier Transform" HOMEPAGE="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/" SRC_URI="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/${PF}-src.tgz" LICENSE="mafft" SLOT="0" KEYWORDS="alpha amd64 ppc ppc-macos ppc64 sparc x86" IUSE="" DEPEND="virtual/libc" S=${WORKDIR}/${PF}/src src_unpack(){ unpack ${A} cd ${S} sed -i \ -e 's@PREFIX = \\\/usr\\\/local\\\/lib\\\/mafft@PREFIX = \\\/usr\\\/bin@' \ -e "s/CC = gcc -O3 /CC = $(tc-getCC)/" \ -e "s/\#CFLAG = -ansi -pedantic/CFLAG = ${CFLAGS}/" \ -e "s/LIBS = -lm/LFLAGS = -lm ${CFLAGS}/" Makefile || die } src_compile() { emake || die } src_install() { cd ${S}/../binaries dobin dvtditr dndfast7 dndblast sextet5 pairalign pairlocalalign disttbfast tbfast tbfast2 mafft-profile f2cl score getlag dndpre dndpre2 splitseq setcore || die cd ${S}/../scripts ln -s mafft fftns ln -s mafft fftnsi ln -s mafft nwns ln -s mafft nwnsi ln -s mafft linsi ln -s mafft ginsi dobin mafft fftns fftnsi nwns nwnsi linsi ginsi || die } Reproducible: Always Steps to Reproduce:
- Don't inline, attach the ebuild, please.
Created attachment 70114 [details] Attached MAFFT ebuild Requested ebuild
*mafft-5.861 (21 Oct 2006) 21 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>; +metadata.xml, +mafft-5.861.ebuild: New package: Multiple sequence alignments using a variety of algorithms.
