new version of dbus has a bad manifest: Reproducible: Always Steps to Reproduce: 1. emerge =sys-apps/dbus-0.36.2 Actual Results: >>> emerge (1 of 1) sys-apps/dbus-0.36.2 to / !!! Security Violation: A file exists that is not in the manifest. !!! File: files/digest-dbus-0.36.1 $ emerge --info Portage 2.0.52-r1 (default-linux/x86/2005.1, gcc-3.4.4, glibc-2.3.5-r1, 2.6.13-gentoo i686) ================================================================= System uname: 2.6.13-gentoo i686 Intel(R) Pentium(R) M processor 1600MHz Gentoo Base System version 1.12.0_pre8 ccache version 2.4 [enabled] dev-lang/python: 2.3.5, 2.4.1-r1 sys-apps/sandbox: 1.2.12 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6 sys-devel/binutils: 2.16.1 sys-devel/libtool: 1.5.20 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=i686 -fomit-frame-pointer -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib/mozilla/defaults/pref /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/splash /etc/terminfo /etc/texmf/web2c /etc/env.d" CXXFLAGS="-O2 -march=i686 -fomit-frame-pointer -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig buildpkg ccache distlocks fixpackages sandbox sfperms strict userpriv usersandbox" GENTOO_MIRRORS="http://gentoo.inode.at/" LANG="en_IE@euro" LINGUAS="en" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /usr/local/portage-mozilla" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="x86 X acpi alsa apache2 apm avi bash-completion berkdb bidi bitmap-fonts cdr clamav crypt css cups curl dbus divx4linux dts dvd dvdr dvdread eds emboss ethereal exif fam ffmpeg font-server foomaticdb fortran freetype gcj gd gdbm gif gnome gpm gstreamer gtk gtk2 hal hardenedphp ieee1394 imlib ipv6 java jpeg kde libclamav libg++ libwww live logitech-mouse mad maildir mikmod mmx mono motif mozcalendar mozdevelop mozilla mozsvg mp3 mpeg ncurses network nls no-htdocs nptl nvidia oav ogg oggvorbis opengl oss pam pdf pdflib perl png python qt quicktime readline real samba screen sdl spell sse sse2 ssl stream subversion svg tcpd tetex threads tiff truetype truetype-fonts type1-fonts vcd vlm vorbis wifi win32codecs wxwindows xine xinerama xml2 xmms xprint xv xvid zlib linguas_en userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LC_ALL, LDFLAGS
this issue seems fixed, dbus-0.36.1 has been removed from portage - and so this error is gone.