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Bug 101339 - bioperl-1.4 install without problem on amd64
Summary: bioperl-1.4 install without problem on amd64
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: AMD64 Linux
: High enhancement
Assignee: AMD64 Project
URL:
Whiteboard:
Keywords: InVCS
Depends on:
Blocks:
 
Reported: 2005-08-04 08:32 UTC by nidelhomme
Modified: 2005-08-05 09:10 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description nidelhomme 2005-08-04 08:32:27 UTC
When trying to install bioperl-1.4 on amd64, I got
sci-biology/bioperl-1.4 is masked by missing keyword

Additionally two of its dependencies have the same problem. These are:
dev-perl/SVG-2.32
dev-perl/GD-SVG-0.25

After doing the following it worked.

1)dev-perl/SVG-2.32 is masked by missing keyword
> mkdir /usr/portage/local/overlays/local/dev-perl
> cp -r /usr/portage/dev-perl/SVG /usr/portage/local/overlays/local/dev-perl
edit the SVG-2.32.ebuild to add the amd64 KEYWORD
> ebuild SVG-2.32.ebuild digest

2)dev-perl/GD-SVG-0.25 is masked by missing keyword
> cp -r /usr/portage/dev-perl/GD-SVG /usr/portage/local/overlays/local/dev-perl
edit the GD-SVG-0.25.ebuild to add the amd64 KEYWORD
> ebuild GD-SVG-0.25.ebuild digest

3)sci-biology/bioperl-1.4 is masked by missing keyword
> mkdir /usr/portage/local/overlays/local/sci-biology
> cp -r /usr/portage/sci-biology/bioperl
/usr/portage/local/overlays/local/sci-biology
edit the bioperl-1.4.ebuild to add the amd64 KEYWORD
> ebuild bioperl-1.4.ebuild digest
> emerge -pvD bioperl
> emerge bioperl

Can you please add the amd64 keyword to the following ebuilds ?
SVG-2.32.ebuild
GD-SVG-0.25.ebuild
bioperl-1.4.ebuild

Cheers,

Nico

Reproducible: Always
Steps to Reproduce:
1.
2.
3.
Comment 1 Jim Laflin 2005-08-04 10:09:45 UTC
Emerges and works here.

Not sure how to test SVG and GD-SVG I'm afraid, but they both emerge and don't
seem to break anything so they wouldn't hurt to go into ~amd64

Marking TESTED

Please keyword ~amd64
sci-biology/bioperl-1.4
dev-perl/SVG-2.32
dev-perl/GD-SVG-0.25

Jim

emerge --info follows
Portage 2.0.51.22-r2 (default-linux/amd64/2005.0, gcc-3.4.3, glibc-2.3.5-r0,
2.6.12-gentoo-r6 x86_64)
=================================================================
System uname: 2.6.12-gentoo-r6 x86_64 AMD Athlon(tm) 64 Processor 3200+
Gentoo Base System version 1.6.13
dev-lang/python:     2.3.5
sys-apps/sandbox:    1.2.11
sys-devel/autoconf:  2.13, 2.59-r6
sys-devel/automake:  1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.5
sys-devel/binutils:  2.15.92.0.2-r10
sys-devel/libtool:   1.5.18-r1
virtual/os-headers:  2.6.11-r2
ACCEPT_KEYWORDS="amd64"
AUTOCLEAN="yes"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=athlon64 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env
/usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.4/env
/usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config
/usr/lib/X11/xkb /usr/share/config /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/splash /etc/terminfo /etc/env.d"
CXXFLAGS="-O2 -march=athlon64 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoconfig distlocks sandbox sfperms strict"
GENTOO_MIRRORS="http://gentoo.blueyonder.co.uk"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X aac alsa amarok amd64 avi berkdb bitmap-fonts cdb cdr crypt cups curl dvd
dvdr eds encode esd fam foomaticdb fortran gd gdbm gif gphoto2 gpm gstreamer gtk
gtk2 imagemagick imlib ipv6 java jpeg junit kde lzw lzw-tiff mad mikmod mp3 mpeg
msn ncurses nls nocd nvidia ogg oggvorbis opengl pam pdflib perl pic png python
qt quicktime readline real ruby sdl spell ssl tcltk tcpd theora tiff truetype
truetype-fonts type1-fonts usb userlocales v4l vcd vorbis xine xml2 xmms xpm xv
zlib userland_GNU kernel_linux elibc_glibc"
Unset:  ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS, LINGUAS
Comment 2 Herbie Hopkins (RETIRED) gentoo-dev 2005-08-05 09:10:06 UTC
Marked ~amd64, thanks for testing.