In bug 31877 we are disabling the pam_console module by default, that is, pam_console is not used anymore to set the permissions on /dev nodes automatically at login, instead we just rely on appropriate group permissions on the devices. In fact, newer versions of pam do not compile the pam_console module by default anymore, so this change is already in effect now. To complete the job, and for cleanness, you should remove the references to pam_console.so in net-www/mod_auth_external/files/pwauth.pam, net-www/mod_auth_pam/files/apache2.pam, net-www/pwauth/files/pwauth.pam* Thanks.
Fixed now.