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Bug 547260 - =dev-python/alembic-0.6.7 with =dev-python/sqlalchemy-1.0.0 fails tests - nose.proxy.TypeError: get_indexes() missing 1 required positional argument: 'tablename'
Summary: =dev-python/alembic-0.6.7 with =dev-python/sqlalchemy-1.0.0 fails tests - nos...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Development (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Jan Matějka (RETIRED)
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-04-21 06:52 UTC by eroen
Modified: 2015-11-19 12:27 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,84.77 KB, text/plain)
2015-04-21 06:52 UTC, eroen
Details

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Description eroen 2015-04-21 06:52:34 UTC
Created attachment 401718 [details]
build.log

sys-fs/bedup-0.9.0_p20140413-r1 depends on <dev-python/alembic-0.7, preventing the usage of the more recent (stable) alembic version.

occam ~ # ~eroen/repos/freshstage3/freshstage3.bash all -c ~eroen/repos/freshstage3/cmdfiles/alembic
Will create fresh stage3 in /tmp/testroot
Running setup() ...
Current stage3: 20150416/stage3-amd64-20150416.tar.bz2
Tree timestamp: 1429428901 Sun 19 Apr 2015 07:35:01 AM UTC
+ tar xpf ../stage3-amd64-20150416.tar.bz2
+ mkdir usr/portage
+ mount --bind /usr/portage/ usr/portage
++ portageq envvar DISTDIR
+ mount --bind /var/distfiles usr/portage/distfiles
+ mount -t proc none proc
+ mount -t sysfs none sys
+ mount --rbind /dev dev
+ cp /etc/resolv.conf etc/resolv.conf
Enabling FEATURES="-news noclean test" ...
Removing bindist from USE ...
Populating with template/ ...
+ cp /home/eroen/repos/freshstage3/freshstage3.bash ./testscript.bash
+ cp /home/eroen/repos/freshstage3/cmdfiles/alembic ./
Chrooting ...
+ env -i TERM=xterm-256color chroot . /bin/bash /testscript.bash build -c /home/eroen/repos/freshstage3/cmdfiles/alembic
Running build() ...
+ env-update
PORTAGE_BZIP2_COMMAND setting is invalid: 'bzip2'
PORTAGE_BZIP2_COMMAND setting from make.globals is invalid: 'bzip2'
>>> Regenerating /etc/ld.so.cache...
Sourcing /etc/profile quietly ...
++ echo 'FEATURES="$FEATURES -test"'
++ echo =dev-python/alembic-0.6.7::gentoo
++ mkdir -p /etc/portage/package.use
++ echo 'dev-lang/python sqlite'
++ echo =dev-python/sqlalchemy-1.0.0
++ emerge -v -1 --onlydeps =dev-python/alembic-0.6.7::gentoo

Performing Global Updates
(Could take a couple of minutes if you have a lot of binary packages.)
  .='update pass'  *='binary update'  #='/var/db update'  @='/var/db move'
  s='/var/db SLOT move'  %='binary move'  S='binary SLOT move'
  p='update /etc/portage/package.*'
/usr/portage/profiles/updates/2Q-2015..........



These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N     ] dev-db/sqlite-3.8.9:3  USE="readline -debug -doc -icu -secure-delete -static-libs -tcl {-test}" ABI_X86="(64) -32 (-x32)" 0 KiB
[ebuild   R    ] dev-lang/python-2.7.9-r1:2.7  USE="gdbm ipv6 ncurses readline sqlite* ssl threads (wide-unicode) xml -berkdb -build -doc -examples -hardened -tk -wininst" 0 KiB
[ebuild   R    ] dev-lang/python-3.3.5-r1:3.3  USE="gdbm ipv6 ncurses readline sqlite* ssl threads xml -build -doc -examples -hardened -tk -wininst" 0 KiB
[ebuild  N     ] dev-python/setuptools-12.0.1  USE="{-test}" PYTHON_TARGETS="python2_7 python3_3 (-pypy) (-pypy3) -python3_4" 0 KiB
[ebuild  N     ] dev-python/markupsafe-0.23  PYTHON_TARGETS="python2_7 python3_3 (-pypy) (-pypy3) -python3_4" 0 KiB
[ebuild  N    ~] dev-python/sqlalchemy-1.0.0  USE="sqlite -doc -examples {-test}" PYTHON_TARGETS="python2_7 python3_3 -pypy -python3_4" 0 KiB
[ebuild  N     ] dev-python/mako-1.0.0  USE="-doc {-test}" PYTHON_TARGETS="python2_7 python3_3 -python3_4" 0 KiB
< ... >
++ emerge -v -1 --noreplace dev-python/nose dev-python/mock =dev-python/sqlalchemy-1.0.0

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N     ] dev-python/coverage-3.7.1  PYTHON_TARGETS="python2_7 python3_3 (-pypy) (-pypy3) -python3_4" 0 KiB
[ebuild  N     ] dev-python/mock-1.0.1-r2  USE="-doc {-test}" PYTHON_TARGETS="python2_7 python3_3 (-pypy) (-pypy3) -python3_4" 0 KiB
[ebuild  N     ] dev-python/nose-1.3.4  USE="-doc -examples {-test}" PYTHON_TARGETS="python2_7 python3_3 (-pypy) (-pypy3) -python3_4" 0 KiB
< ... >
++ echo 'FEATURES="$FEATURES test"'
++ emerge -v -1 =dev-python/alembic-0.6.7::gentoo

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild  N    ~] dev-python/alembic-0.6.7  USE="{test} -doc" PYTHON_TARGETS="python2_7 python3_3 -python3_4" 0 KiB
< ... >
======================================================================
ERROR: test_add_idx_non_col (tests.test_autogen_indexes.NoUqReportsIndAsUqTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/test_autogen_indexes.py", line 420, in test_add_idx_non_col
    diffs = self._fixture(m1, m2)
  File "/var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/test_autogenerate.py", line 115, in _fixture
    include_schemas=include_schemas
  File "/var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/build/lib/alembic/autogenerate/api.py", line 218, in _produce_net_changes
    inspector, metadata, diffs, autogen_context)
  File "/var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/build/lib/alembic/autogenerate/compare.py", line 81, in _compare_tables
    inspector.reflecttable(t, None)
  File "/usr/lib64/python3.3/site-packages/sqlalchemy/engine/reflection.py", line 582, in reflecttable
    include_columns, exclude_columns, reflection_options)
  File "/usr/lib64/python3.3/site-packages/sqlalchemy/engine/reflection.py", line 712, in _reflect_indexes
    indexes = self.get_indexes(table_name, schema)
  File "/usr/lib64/python3.3/site-packages/sqlalchemy/engine/reflection.py", line 481, in get_indexes
    info_cache=self.info_cache, **kw)
  File "/var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/test_autogen_indexes.py", line 612, in get_indexes
    self, connection, tablename, **kw
  File "<string>", line 2, in get_unique_constraints
  File "/usr/lib64/python3.3/site-packages/sqlalchemy/engine/reflection.py", line 54, in cache
    ret = fn(self, con, *args, **kw)
  File "/usr/lib64/python3.3/site-packages/sqlalchemy/dialects/sqlite/base.py", line 1215, in get_unique_constraints
    include_auto_indexes=True, **kw):
nose.proxy.TypeError: get_indexes() missing 1 required positional argument: 'tablename'
-------------------- >> begin captured stdout << ---------------------
Creating directory /var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/scratch/scripts ... done
Creating directory /var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/scratch/scripts/versions ... done
Generating /var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/scratch/scripts/script.py.mako ... done
Generating /var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/scratch/scripts/env.py ... done
Generating /var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/scratch/test_alembic.ini ... done
Generating /var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/scratch/scripts/README ... done
Please edit configuration/connection/logging settings in '/var/tmp/portage/dev-python/alembic-0.6.7/work/alembic-0.6.7-python3_3/tests/scratch/test_alembic.ini' before proceeding.

--------------------- >> end captured stdout << ----------------------
-------------------- >> begin captured logging << --------------------
alembic.migration: INFO: Context impl SQLiteImpl.
alembic.migration: INFO: Will assume non-transactional DDL.
--------------------- >> end captured logging << ---------------------

... and many more.
Comment 1 eroen 2015-04-21 06:53:04 UTC
occam / # emerge --info '=dev-python/alembic-0.6.7::gentoo'
Portage 2.2.14 (python 2.7.9-final-0, default/linux/amd64/13.0, gcc-4.8.4, glibc-2.20-r2, 3.18.2.e0-occam0+ x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.18.2.e0-occam0+-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.2
KiB Mem:     7944088 total,   2649916 free
KiB Swap:   16777212 total,  16677008 free
Timestamp of tree: Tue, 21 Apr 2015 06:30:01 +0000
ld GNU ld (Gentoo 2.24 p1.4) 2.24
app-shells/bash:          4.2_p53
dev-lang/perl:            5.20.2
dev-lang/python:          2.7.9-r1, 3.3.5-r1
dev-util/pkgconfig:       0.28-r2
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.13.11
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.69
sys-devel/automake:       1.13.4
sys-devel/binutils:       2.24-r3
sys-devel/gcc:            4.8.4
sys-devel/gcc-config:     1.7.3
sys-devel/libtool:        2.4.6
sys-devel/make:           4.1-r1
sys-kernel/linux-headers: 3.18 (virtual/os-headers)
sys-libs/glibc:           2.20-r2
Repositories: gentoo
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync noclean parallel-fetch preserve-libs protect-owned sandbox sfperms strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY=""
USE="acl amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx mmxext modules multilib ncurses nls nptl openmp pam pcre readline session sse sse2 ssl tcpd unicode zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby20" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC, USE_PYTHON

occam / # emerge -pqv '=dev-python/alembic-0.6.7::gentoo'
[ebuild  N    ] dev-python/alembic-0.6.7  USE="{test} -doc" PYTHON_TARGETS="python2_7 python3_3 -python3_4"
Comment 2 eroen 2015-04-21 06:53:55 UTC
Oh, the tests pass with stable sqlalchemy-0.9.8
Comment 3 Justin Lecher (RETIRED) gentoo-dev 2015-11-19 12:27:42 UTC
commit 51a8c34af9d6ca42305e63ee044dfc031d68ae1d
Author: Justin Lecher <jlec@gentoo.org>
Date:   Thu Nov 19 11:39:17 2015 +0100

    dev-python/sqlalchemy: Clean old

    obsoletes
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=481426
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=481634
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=489488
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=546892
    Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=547260

    Package-Manager: portage-2.2.25
    Signed-off-by: Justin Lecher <jlec@gentoo.org>

    https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=51a8c34af9d6ca42305e63ee044dfc031d68ae1d