sci-physics/geant-4.10.00_p01 fails to build because CLHEP/Utility/thread_local.h file is missing. Using USE=-threads did not work around the problem. Reproducible: Always
I couldn't add the complete build log as attachment, so here is the relevant part... [ 1%] Building CXX object source/global/CMakeFiles/G4global.dir/HEPRandom/src/G4Poisson.cc.o cd /var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant-4.10.00_p01_build/source/global && /usr/bin/x86_64-pc-linux-gnu-g++ -DG4GLOB_ALLOC_EXPORT -DG4VERBOSE -DG4_STORE_TRAJECTORY -DG4global_EXPORTS -DGEANT4_DEVELOPER_GENTOO -DNDEBUG -O2 -march=native -pipe -W -Wall -pedantic -Wno-non-virtual-dtor -Wno-long-long -Wwrite-strings -Wpointer-arith -Woverloaded-virtual -Wno-variadic-macros -Wshadow -pipe -std=c++98 -fPIC -I/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01/source/global/management/include -I/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01/source/global/HEPGeometry/include -I/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01/source/global/HEPNumerics/include -I/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01/source/global/HEPRandom/include -o CMakeFiles/G4global.dir/HEPRandom/src/G4Poisson.cc.o -c /var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01/source/global/HEPRandom/src/G4Poisson.cc In file included from /usr/include/CLHEP/Random/RandBreitWigner.h:29:0, from /usr/include/CLHEP/Random/Randomize.h:45, from /var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01/source/global/HEPRandom/include/Randomize.hh:32, from /var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01/source/global/HEPRandom/include/G4Poisson.hh:49, from /var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01/source/global/HEPRandom/src/G4Poisson.cc:31: /usr/include/CLHEP/Random/RandFlat.h:35:40: fatal error: CLHEP/Utility/thread_local.h: No such file or directory #include "CLHEP/Utility/thread_local.h" ^ compilation terminated. source/global/CMakeFiles/G4global.dir/build.make:353: recipe for target 'source/global/CMakeFiles/G4global.dir/HEPRandom/src/G4Poisson.cc.o' failed make[2]: *** [source/global/CMakeFiles/G4global.dir/HEPRandom/src/G4Poisson.cc.o] Error 1 make[2]: *** Waiting for unfinished jobs.... Linking CXX shared library ../../../../outputs/library/Linux-g++/libG4gl2ps.so cd /var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant-4.10.00_p01_build/source/visualization/externals/gl2ps && /usr/bin/cmake -E cmake_link_script CMakeFiles/G4gl2ps.dir/link.txt --verbose=1 /usr/bin/x86_64-pc-linux-gnu-g++ -fPIC -O2 -march=native -pipe -W -Wall -pedantic -Wno-non-virtual-dtor -Wno-long-long -Wwrite-strings -Wpointer-arith -Woverloaded-virtual -Wno-variadic-macros -Wshadow -pipe -std=c++98 -Wl,-O1 -Wl,--as-needed -shared -Wl,-soname,libG4gl2ps.so -o ../../../../outputs/library/Linux-g++/libG4gl2ps.so CMakeFiles/G4gl2ps.dir/src/G4OpenGL2PSAction.cc.o CMakeFiles/G4gl2ps.dir/src/gl2ps.cc.o -lz -lGLU -lGL -lSM -lICE -lX11 -lXext make[2]: Leaving directory '/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant-4.10.00_p01_build' /usr/bin/cmake -E cmake_progress_report /var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant-4.10.00_p01_build/CMakeFiles [ 1%] Built target G4gl2ps make[2]: Leaving directory '/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant-4.10.00_p01_build' CMakeFiles/Makefile2:908: recipe for target 'source/global/CMakeFiles/G4global.dir/all' failed make[1]: *** [source/global/CMakeFiles/G4global.dir/all] Error 2 make[1]: Leaving directory '/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant-4.10.00_p01_build' Makefile:137: recipe for target 'all' failed make: *** [all] Error 2 * ERROR: sci-physics/geant-4.10.00_p01::gentoo failed (compile phase): * emake failed * * If you need support, post the output of `emerge --info '=sci-physics/geant-4.10.00_p01::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-physics/geant-4.10.00_p01::gentoo'`. * The complete build log is located at '/var/tmp/portage/sci-physics/geant-4.10.00_p01/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-physics/geant-4.10.00_p01/temp/environment'. * Working directory: '/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant-4.10.00_p01_build' * S: '/var/tmp/portage/sci-physics/geant-4.10.00_p01/work/geant4.10.00.p01'
1) Please attach the entire build log to this bug report. 2) Please post your `emerge --info' output in a comment.
There seems to be a problem with bugzilla when I try to create an attachment, that's why I didn't upload the complete build log. The emerge --info is below: Portage 2.2.14_rc1 (python 3.4.2-final-0, default/linux/amd64/13.0, gcc-4.8.3, glibc-2.19-r1, 3.16.3-gentoo x86_64) ================================================================= System uname: Linux-3.16.3-gentoo-x86_64-Intel-R-_Core-TM-_i7_CPU_860_@_2.80GHz-with-gentoo-2.2 KiB Mem: 4040216 total, 518960 free KiB Swap: 0 total, 0 free Timestamp of tree: Sun, 12 Oct 2014 19:00:01 +0000 ld GNU ld (Gentoo 2.24 p1.4) 2.24 app-shells/bash: 4.2_p53 dev-lang/perl: 5.20.1 dev-lang/python: 2.7.8, 3.4.2 dev-util/cmake: 3.0.2 dev-util/pkgconfig: 0.28-r2 sys-apps/baselayout: 2.2 sys-apps/openrc: 0.13.1 sys-apps/sandbox: 2.6-r1 sys-devel/autoconf: 2.69 sys-devel/automake: 1.11.6, 1.14.1 sys-devel/binutils: 2.24-r3 sys-devel/gcc: 4.8.3 sys-devel/gcc-config: 1.8 sys-devel/libtool: 2.4.2-r1 sys-devel/make: 4.1 sys-kernel/linux-headers: 3.16 (virtual/os-headers) sys-libs/glibc: 2.19-r1 Repositories: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=native -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=native -pipe" DISTDIR="/usr/portage/distfiles" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync" FFLAGS="-O2 -pipe" GENTOO_MIRRORS=" ftp://gentoo.cites.uiuc.edu/pub/gentoo/ " LANG="pt_BR.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j5" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" USE="X aac acl alsa amd64 bash-completion berkdb bzip2 cairo cli cracklib crypt cups curl cxx dbus directfb djvu dri exif fbcon fftw flac fontconfig fortran gdbm gif gpm graphviz gtk iconv icu ipv6 jpeg jpeg2k lame lapack lcms lua lzma lzo mmx mng modules mp3 mpg123 multilib ncurses nls nptl opengl openmp pam pango pcre pdf perl png postscript python readline session smp socks5 sqlite sse sse2 sse3 sse4_1 ssl ssse3 svg tcpd tiff tk truetype udev unicode usb v4l vpx wayland webp x264 xcb xft xml xpm zip zlib" ABI_X86="64" ALSA_CARDS="snd-hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="peruser" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="pt pt_BR" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby21" USERLAND="GNU" VIDEO_CARDS="radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USE_PYTHON="2.7" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, SYNC
Created attachment 386612 [details] build.log This is the complete build log. My bad, it was a file permission issue. My local user wasn't in portage group yet...
Created attachment 386690 [details, diff] CLHEP-includes.patch This patch for clhep-2.2.0.1 resolved the build problem. What happened is that there were two headers not being installed, so I fixed the CMakeLists.txt file to install those headers. After that, geant built without problems. —Guilherme
I am closing this bug, since the problem is not in geant, but in clhep-2.2.0.1. I opened a separate bug (#525440) for the issue with clhep.
*** Bug 525440 has been marked as a duplicate of this bug. ***
I have also reported this upstream, it's already fixed since 2.2.0.2, so a version bump could also fix this issue.
Bumped to sci-physics/clhep-2.2.0.5. New version is not affected.
*** Bug 531042 has been marked as a duplicate of this bug. ***
