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Bug 499300 - media-libs/openexr-2.1.0 - ld: /usr/libIlmThread.so: undefined reference to `sem_init'
Summary: media-libs/openexr-2.1.0 - ld: /usr/libIlmThread.so: undefined reference to `...
Status: RESOLVED DUPLICATE of bug 462494
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Library (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Graphics Project
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2014-01-26 06:59 UTC by Heiko Baums
Modified: 2014-01-29 22:01 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,92.06 KB, text/plain)
2014-01-26 06:59 UTC, Heiko Baums
Details

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Description Heiko Baums 2014-01-26 06:59:21 UTC
media-libs/openexr-2.1.0 fails to build with media-libs/ilmbase-2.1.0.

This is the error message:

make[1]: Entering directory '/var/tmp/portage/media-libs/openexr-2.1.0/work/openexr-2.1.0-amd64/exrheader'
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/var/tmp/portage/media-libs/openexr-2.1.0/work/openexr-2.1.0/exrheader -I../config -I.. -I/var/tmp/portage/media-libs/openexr-2.1.0/work/openexr-2.1.0/IlmImf -I/var/tmp/portage/media-libs/openexr-2.1.0/work/openexr-2.1.0/config -pthread -I/usr/include/OpenEXR    -pipe -march=amdfam10 -O2 -pipe -fomit-frame-pointer -c -o main.o /var/tmp/portage/media-libs/openexr-2.1.0/work/openexr-2.1.0/exrheader/main.cpp
/bin/sh ../libtool --tag=CXX   --mode=link x86_64-pc-linux-gnu-g++ -pipe -march=amdfam10 -O2 -pipe -fomit-frame-pointer  -Wl,-O1 -Wl,--as-needed -o exrheader main.o -lImath -lHalf -lIex -lIexMath -lIlmThread -pthread ../IlmImf/libIlmImf.la -lz 
libtool: link: x86_64-pc-linux-gnu-g++ -pipe -march=amdfam10 -O2 -pipe -fomit-frame-pointer -Wl,-O1 -o .libs/exrheader main.o -pthread  -Wl,--as-needed ../IlmImf/.libs/libIlmImf.so -lImath -lHalf -lIex -lIexMath -lIlmThread -lz -pthread
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_init'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_destroy'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `pthread_create'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_post'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_trywait'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_getvalue'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_wait'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
Makefile:299: recipe for target 'exrheader' failed
make[1]: *** [exrheader] Error 1
make[1]: Leaving directory '/var/tmp/portage/media-libs/openexr-2.1.0/work/openexr-2.1.0-amd64/exrheader'
Makefile:385: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1


Reproducible: Always




emerge --info:

Portage 2.2.8-r1 (default/linux/amd64/13.0/desktop, gcc-4.8.2, glibc-2.18-r1, 3.12.7-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-3.12.7-gentoo-x86_64-AMD_Phenom-tm-_II_X4_945_Processor-with-gentoo-2.2
KiB Mem:     3980040 total,    731332 free
KiB Swap:    1048572 total,   1047856 free
Timestamp of tree: Sun, 26 Jan 2014 05:45:01 +0000
ld GNU ld (GNU Binutils) 2.24
app-shells/bash:          4.2_p45-r1
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.6, 3.3.3
dev-util/cmake:           2.8.12.1-r3
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.4
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6, 1.12.6, 1.14.1
sys-devel/binutils:       2.24-r1
sys-devel/gcc:            4.8.2
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           4.0-r1
sys-kernel/linux-headers: 3.13 (virtual/os-headers)
sys-libs/glibc:           2.18-r1
Repositories: gentoo x-portage
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=amdfam10 -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/splash /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=amdfam10 -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/ http://ftp.halifax.rwth-aachen.de/gentoo/ http://ftp.spline.inf.fu-berlin.de/mirrors/gentoo/"
INSTALL_MASK="/usr/lib/systemd /usr/lib64/firefox/browser/searchplugins"
LANG="de_DE.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j4"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.de.gentoo.org/gentoo-portage"
USE="3dnow 3dnowext X a52 aac aacs acl acpi alsa amd64 aspell audiofile bash-completion berkdb bluray branding bzip2 cairo caps cdda cddb cdparanoia cdr cli consolekit cracklib crypt cryptsetup css cups cxx dbus dga djvu dri dts dv dvb dvd dvdr emboss encode exif faac fam fbcon fbcondecor ffmpeg firefox flac foomaticdb ftp gcj gdbm gif gimp glamor gnome-keyring gnutls gpg gpm gtk gzip hddtemp hunspell iconv idn imagemagick imap ipod ipv6 jbig jpeg jpeg2k justify latex lcms ldap libnotify libsamplerate lirc lm_sensors lock lzma lzo mad maildir matroska mbox mikmod mime mms mmx mng modemmanager modplug modules mozilla mp3 mp4 mpeg multilib musicbrainz ncurses networkmanager nls nntp nptl nsplugin ntp ogg openal openexr opengl openmp opus pam pango pcre pdf pkcs11 png policykit posix postscript ppds qt3support quicktime raw readline rss rtmp rtsp scanner schroedinger sdl session sndfile sound speex spell sse sse2 sse3 ssl ssse3 startup-notification svg syslog taglib tcpd theora threads thunar tiff timidity tk truetype udev udisks unicode upower usb v4l vcd vdpau vorbis wavpack webp win32codecs wmf wxwidgets x264 xcb xcomposite xface xft xml xorg xpm xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ice1712" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="de en" LIRC_DEVICES="devinput" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby18" SANE_BACKENDS="plustek" USERLAND="GNU" VIDEO_CARDS="fglrx v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON


emerge -pqv:
[ebuild  N    ] media-libs/openexr-2.1.0  USE="-examples -static-libs" ABI_X86="(64) -32 (-x32)"
Comment 1 Heiko Baums 2014-01-26 06:59:49 UTC
Created attachment 368744 [details]
build.log
Comment 2 Martin Dummer 2014-01-26 08:28:58 UTC
I can confirm the problem, have the same error messsage on my side.
Comment 3 Silvio 2014-01-26 10:52:54 UTC
Same bug here:


h -lHalf -lIex -lIexMath -lIlmThread -pthread ../IlmImf/libIlmImf.la -lz 
libtool: link: x86_64-pc-linux-gnu-g++ -pipe -march=native -O2 -pipe -fomit-frame-pointer -Wl,-O1 -o .libs/exrheader main.o -pthread  -Wl,--as-needed ../IlmImf/.libs/libIlmImf.so -lImath -lHalf -lIex -lIexMath -lIlmThread -lz -pthread
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_init'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_destroy'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `pthread_create'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_post'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_trywait'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_getvalue'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `sem_wait'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.2/../../../../lib64/libIlmThread.so: undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
Makefile:299: recipe for target 'exrheader' failed
make[1]: *** [exrheader] Error 1
make[1]: Leaving directory '/var/tmp/portage/media-libs/openexr-2.1.0/work/openexr-2.1.0-amd64/exrheader'
Makefile:385: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1



my emerge --info
Portage 2.2.8 (default/linux/amd64/13.0/desktop/kde, gcc-4.8.2, glibc-2.18-r1, 3.12.8-gentoo x86_64)
=================================================================
System uname: Linux-3.12.8-gentoo-x86_64-Intel-R-_Core-TM-_i7-2630QM_CPU_@_2.00GHz-with-gentoo-2.2
KiB Mem:    16443380 total,  11769820 free
KiB Swap:          0 total,         0 free
Timestamp of tree: Sun, 26 Jan 2014 09:15:01 +0000
ld ld di GNU (GNU Binutils) 2.24
distcc 3.1 x86_64-pc-linux-gnu [disabled]
ccache version 3.1.9 [enabled]
app-shells/bash:          4.2_p45-r1
dev-java/java-config:     2.2.0
dev-lang/python:          2.7.6, 3.3.3
dev-util/ccache:          3.1.9-r3
dev-util/cmake:           2.8.12.1-r3
dev-util/pkgconfig:       0.28
sys-apps/baselayout:      2.2
sys-apps/openrc:          0.12.4
sys-apps/sandbox:         2.6-r1
sys-devel/autoconf:       2.13, 2.69
sys-devel/automake:       1.11.6, 1.12.6, 1.14.1
sys-devel/binutils:       2.24-r1
sys-devel/gcc:            4.7.3-r1, 4.8.2
sys-devel/gcc-config:     1.8
sys-devel/libtool:        2.4.2
sys-devel/make:           4.0-r1
sys-kernel/linux-headers: 3.13 (virtual/os-headers)
sys-libs/glibc:           2.18-r1
Repositories: gentoo sunrise gamerlay Techwolf pinkbyte luman voyageur nikai yarik-overlay zugaina belak bangert maggu2810-overlay maekke pentoo amielke-overlay manual bibletime
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.1/conf /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=native -O2 -pipe -fomit-frame-pointer"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs ccache config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS=" http://mirror.ovh.net/gentoo-distfiles/ http://ftp.heanet.ie/pub/gentoo/ http://mirror.ovh.net/gentoo-distfiles/ http://www.die.unipd.it/pub/Linux/distributions/gentoo-sources/ rsync://rsync3.it.gentoo.org/gentoo-sources/ ftp://ftp.unina.it/pub/linux/distributions/gentoo/"
LANG="it_IT.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/sunrise /var/lib/layman/gamerlay /var/lib/layman/techwolf /var/lib/layman/pinkbyte /var/lib/layman/luman /var/lib/layman/voyageur /var/lib/layman/nikai /var/lib/layman/yarik-overlay /var/lib/layman/zugaina /var/lib/layman/belak /var/lib/layman/bangert /var/lib/layman/maggu2810-overlay /var/lib/layman/maekke /var/lib/layman/pentoo /var/lib/layman/amielke-overlay /usr/portage/local/manual /var/lib/layman/bibletime"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="3ds 64bit X a52 aac aacs aalib acl acpi ads aiglx akode alias alsa amd64 amr ao apache apm apng audiofile autoreplace autotrace avahi avi bash-completion berkdb bitmap-fonts bluetooth bluray bmp branding browserplugin bzip bzip2 cairo cdaudio cdda cdr cli clucene connectionstatus consolekit contactnotes cracklib crypt cuda cups cvd cvs cxx dbus declarative dia dialup djvu dri dtmf dts dv dvd dvdr dvdread dvi dynamicplugin ebook efi emboss encode ethereal exif fam farstream fat ffmpeg firefox flac fluidsynth fontconfig foomaticdb fortran freetds frei0r gbm gdbm geolocation gif gimp git gles2 glib glitz gphoto2 gpm gps gpu groupwise gstreamer gtk gtk3 h323 highlight history hvm i8x0 iconv icu ieee1394 imagemagick innodb ios iphone ipod ipv6 irc ithreads jack java javascript jingle jpeg jpeg2k kde kdenlive kdepim kerberos kipi kontact kqemu lame laptop lcms ldap libkms libnotify lm_sensors lucene m4a mad marble mbrola mdb mdnsresponder-compat mercurial midi mime minizip mmx mmxext mng modules moonlight mozilla mp3 mp4 mpeg mpeg2 mplayer msn mssql multilib musepack musicbrainz mysql ncurses netmeeting nls nowlistening npt1 nptl nptlonly nsplugin ntfs nvidia odbc ogg openal openexr opengl openipmi openmp opus oss pam pango pcmcia pcre pda pdf perl phonon plasma pmu png policykit portaudio postgres ppds python python3 qemu qt qt3support qt4 quicktime rar raw rdesktop rdp readline reiserfs reports samba sametime sane scanner sdl semantic-desktop session sip sipim skype smp sms soundtouch speex spell sqlite sse sse2 ssh ssl ssse3 startup-notification subtitles subversion svg tcpd texteffect texteffects theora tidy tiff timidity tk tordns translator truetype truetype-fonts twolame type1-fonts udev udisks unicode upower usb utempter v4l v4l2 vcd vdpau video virtualbox vnc vorbis wav wavpack webkit webpresence wicd wifi win32codecs win64 winbind winetriks winpopup wlm wmf wxwidgets wxwindows x264 xcb xcomposite xen xetex xine xinerama xml xmp xscreensaver xv xvid xvmc yahoo zeroconf zlib" ABI_X86="64" ALSA_CARDS="snd_hda_intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev joystick synaptics wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="it en it_IT" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_3" RUBY_TARGETS="ruby19 ruby18 ruby20" SANE_BACKENDS="*" USERLAND="GNU" VIDEO_CARDS="nvidia nv vesa nouveau v4l v4l2" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 4 Samuli Suominen (RETIRED) gentoo-dev 2014-01-26 13:26:53 UTC

*** This bug has been marked as a duplicate of bug 462494 ***
Comment 5 Silvio 2014-01-29 22:01:47 UTC
Ok, I've compliled binutils before and then emerging world everything went well:

emerge -1v binutils
emerge -NDavu world

openexr compiles well and everything goes on.