Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 388411 - dev-python/cython-0.14.1 fails tests
Summary: dev-python/cython-0.14.1 fails tests
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] Development (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Python Gentoo Team
URL:
Whiteboard:
Keywords:
Depends on: 393679
Blocks:
  Show dependency tree
 
Reported: 2011-10-25 06:26 UTC by Paweł Hajdan, Jr. (RETIRED)
Modified: 2014-02-21 13:12 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log.gz (dev-python:cython-0.14.1:20111024-123722.log.gz,83.94 KB, application/x-gzip)
2011-10-25 06:26 UTC, Paweł Hajdan, Jr. (RETIRED)
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Paweł Hajdan, Jr. (RETIRED) gentoo-dev 2011-10-25 06:26:59 UTC
Created attachment 290757 [details]
build.log.gz

======================================================================
FAIL: runTest (__main__.CythonCompileTestCase)
compiling (c) e_declarations
----------------------------------------------------------------------
Traceback (most recent call last):
  File "runtests.py", line 321, in runTest
    self.runCompileTest()
  File "runtests.py", line 325, in runCompileTest
    self.test_directory, self.expect_errors, self.annotate)
  File "runtests.py", line 461, in compile
    self.assertEquals(expected, error)
AssertionError: u'2:18: Function cannot return an array' != u'3:18: Function cannot return a function'
- 2:18: Function cannot return an array
? ^                              ^^^^^^
+ 3:18: Function cannot return a function
? ^                             +++ ^^^^^


======================================================================
FAIL: numpy_test ()
Doctest: numpy_test
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/lib/python2.7/doctest.py", line 2166, in runTest
    raise self.failureException(self.format_failure(new.getvalue()))
AssertionError: Failed doctest test for numpy_test
  File "/var/tmp/portage/dev-python/cython-0.14.1/work/Cython-0.14.1/tests-2.7/run/c/numpy_test.so", line 162, in numpy_test

----------------------------------------------------------------------
File "/var/tmp/portage/dev-python/cython-0.14.1/work/Cython-0.14.1/tests-2.7/run/c/numpy_test.so", line 251, in numpy_test
Failed example:
    test_c_contig(f_arr)
Expected:
    Traceback (most recent call last):
       ...
    ValueError: ndarray is not C contiguous
Got:
    Traceback (most recent call last):
      File "/usr/lib/python2.7/doctest.py", line 1254, in __run
        compileflags, 1) in test.globs
      File "<doctest numpy_test[29]>", line 1, in <module>
        test_c_contig(f_arr)
      File "numpy_test.pyx", line 265, in numpy_test.test_c_contig (numpy_test.c:2628)
    ValueError: ndarray is not C-contiguous
----------------------------------------------------------------------


Portage 2.1.10.11 (default/linux/x86/10.0/developer, gcc-4.5.3, glibc-2.12.2-r0, 3.0.6-gentoo i686)
=================================================================
System uname: Linux-3.0.6-gentoo-i686-Intel-R-_Core-TM-2_Duo_CPU_P8700_@_2.53GHz-with-gentoo-2.0.3
Timestamp of tree: Sat, 22 Oct 2011 13:30:01 +0000
app-shells/bash:          4.1_p9
dev-java/java-config:     2.1.11-r3
dev-lang/python:          2.7.1-r1, 3.1.3-r1
dev-util/cmake:           2.8.4-r1
dev-util/pkgconfig:       0.26
sys-apps/baselayout:      2.0.3
sys-apps/openrc:          0.8.3-r1
sys-apps/sandbox:         2.4
sys-devel/autoconf:       2.68
sys-devel/automake:       1.11.1
sys-devel/binutils:       2.20.1-r1
sys-devel/gcc:            4.5.3-r1
sys-devel/gcc-config:     1.4.1-r1
sys-devel/libtool:        2.4-r1
sys-devel/make:           3.82-r1
sys-kernel/linux-headers: 2.6.36.1 (virtual/os-headers)
sys-libs/glibc:           2.12.2
Repositories: gentoo x-portage
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="*"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -march=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=i686 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs collision-protect compress-build-logs distlocks ebuild-locks fixlafiles fixpackages multilib-strict news parallel-fetch protect-owned sandbox sfperms sign splitdebug strict test test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox"
FFLAGS=""
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,--hash-style=gnu -Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alsa berkdb bzip2 cairo cdda cdr cli consolekit cracklib crypt cups cxx dbus device-mapper dri dts dvd dvdr emacs emboss encode exif fam firefox flac fortran gdbm gdu gif git gnome-keyring gnutls gtk iconv icu jpeg lcms libnotify mad mbox mercurial mng modules mp3 mp4 mpeg mudflap ncurses nls nptl nptlonly nss ogg opengl openmp pam pango pcre pdf perl png policykit ppds pppd python qt3support readline sdl secure-delete session snmp spell sqlite ssl startup-notification subversion svg sysfs tcb tcpd threads tiff toolkit-scroll-bars truetype udev unicode usb vorbis x264 x86 xcb xft xinerama xml xorg xulrunner xv xvfb xvid zlib" ALSA_CARDS="ens1371" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan stage tables krita karbon braindump" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="evdev keyboard vmmouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" PHP_TARGETS="php5-3" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="vmware vesa vga" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Comment 1 Johan Bergström 2011-12-08 22:23:19 UTC
Please use the patch for numpy in bug 393679 and try again. It works for me.
Comment 2 Patrick Lauer gentoo-dev 2011-12-26 12:02:14 UTC
+  26 Dec 2011; Patrick Lauer <patrick@gentoo.org> cython-0.15.1.ebuild:
+  Fixing deps for #388411

This appears to fix the issue for 0.15.1, I didn't test 0.14.1
Comment 3 Mike Gilbert gentoo-dev 2012-05-31 15:23:15 UTC
This version has been dropped from the tree, and appears to have been fixed in later versions.
Comment 4 Mike Gilbert gentoo-dev 2012-05-31 15:23:46 UTC
Never mind... I was looking at the wrong package.
Comment 5 Justin Lecher (RETIRED) gentoo-dev 2014-02-21 13:12:05 UTC
Version is dropped and newer seem to work