Today 'emerge world' started with downgrading dev-libs/gmp from 5.0.1 to 4.3.2. At the second step 'emerge world' wants to upgrade/emerge dev-libs/libtasn1-2.8, which fails with endless: * econf: updating libtasn1-2.8/build-aux/config.sub with /usr/share/gnuconfig/config.sub ./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib expr: error while loading shared libraries: libgmp.so.10: cannot open shared object file: No such file or directory expr: error while loading shared libraries: libgmp.so.10: cannot open shared object file: No such file or directory expr: error while loading shared libraries: libgmp.so.10: cannot open shared object file: No such file or directory ... A subsequent 'emerge -pvuDN world' needs more than 8 minutes, which is extremely long and reports: root@thinkpad:/root(51)# time emerge -pvuDN world These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild U ] dev-libs/libtasn1-2.8 [2.7] USE="doc" 0 kB [ebuild U ] x11-apps/xmodmap-1.0.5 [1.0.4] USE="(-debug%)" 0 kB [ebuild U ] app-crypt/pinentry-0.8.0-r1 [0.8.0] USE="gtk ncurses qt4 -caps -static" 0 kB [ebuild U ] sys-auth/pambase-20100925 [20100819] USE="consolekit cracklib gnome-keyring sha512 -debug -kerberos -minimal% -mktemp -passwdqc (-selinux) -ssh" 0 kB [ebuild R ] gnome-base/libbonobo-2.24.3 USE="doc examples%* -debug -test%" 0 kB [ebuild U ] app-editors/emacs-23.2-r1 [23.2] USE="X Xaw3d alsa dbus gif gpm gtk jpeg kerberos motif png svg tiff xpm -gconf -gzip-el -hesiod -m17n-lib -sound -source -toolkit-scroll-bars -xft" 0 kB [ebuild U ] sci-visualization/pyxplot-0.8.3 [0.8.2] 0 kB [ebuild R ] media-libs/libtheora-1.1.1 USE="doc encode examples -static-libs%" 0 kB [ebuild R ] media-libs/liblo-0.26 USE="doc ipv6 -static-libs%" 0 kB [ebuild U ] media-gfx/digikam-1.4.0-r1 [1.4.0] USE="doc geolocation gphoto2 lensfun semantic-desktop thumbnails -addressbook (-aqua) -debug -handbook% (-kdeenablefinal) -themedesigner -video" LINGUAS="de fr -ar -be -bg -ca -cs -da -el -en_GB -eo -es -et -eu -fa -fi -ga -gl -he -hi -hne -hr -hu -is -it -ja -km -ko -lt -lv -nb -nds -ne -nl -nn -pa -pl -pt -pt_BR -ro -ru -se -sk -sl -sv -th -tr -uk -vi -zh_CN -zh_TW" 0 kB Total: 10 packages (7 upgrades, 3 reinstalls), Size of downloads: 0 kB !!! One or more updates have been skipped due to a dependency conflict: dev-libs/gmp:0 (dev-libs/gmp-5.0.1, ebuild scheduled for merge) conflicts with <dev-libs/gmp-5.0 required by (sci-mathematics/axiom-201005, installed) real 8m23.150s user 3m2.155s sys 0m3.708s Before I call revdep-rebuild, I want to submit this report. Reproducible: Always root@thinkpad:/root(52)# emerge --info Portage 2.1.9.10 (default/linux/x86/10.0/desktop, gcc-4.4.4, glibc-2.12.1-r1, 2.6.35-gentoo-r7 i686) ================================================================= System uname: Linux-2.6.35-gentoo-r7-i686-Intel-R-_Pentium-R-_M_processor_2.00GHz-with-gentoo-2.0.1 Timestamp of tree: Sun, 26 Sep 2010 07:30:01 +0000 ccache version 2.4 [disabled] app-shells/bash: 4.1_p7 dev-java/java-config: 2.1.11 dev-lang/python: 2.6.5-r3, 3.1.2-r4 dev-util/ccache: 2.4-r8 dev-util/cmake: 2.8.1-r2 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.6.3 sys-apps/sandbox: 2.3-r1 sys-devel/autoconf: 2.13, 2.67 sys-devel/automake: 1.4_p6-r1, 1.7.9-r2, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.4-r2, 4.5.1 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.10 sys-devel/make: 3.81-r2 virtual/os-headers: 2.6.35 (sys-kernel/linux-headers) ACCEPT_KEYWORDS="x86 ~x86" ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.1 cadsoft" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=pentium-m -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=pentium-m -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch" FFLAGS="-O2 -march=pentium-m -fomit-frame-pointer" GENTOO_MIRRORS="http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/ rsync://ftp.fi.muni.cz/pub/linux/gentoo ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://vlaai.snt.ipv6.utwente.nl/pub/os/linux/gentoo/" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de fr" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages/" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/arcon /var/lib/layman/java-overlay /var/lib/layman/lordvan /var/lib/layman/pro-audio /var/lib/layman/science /var/lib/layman/sunrise /var/lib/layman/x11 /usr/local/portage /var/lib/cpan" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="R X Xaw3d a52 aac abiword acl acpi afs alsa amrr ao apache2 applet archive arpack asf aspell assistant audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 cairo cardbus cdda cddb cdf cdio cdparanoia cdr cgi chm cli consolekit corba cracklib crypt css cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds elf emacs emboss empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fpx fts3 fuse galago garmin gd gdal gdbm gedit geoip geolocation geos gif gimp ginac git glade glib gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kdrive kerberos kpathsea ladspa lame lapack laptop latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lua lzo mad madwifi mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pam pango pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python python-bindings qemu qhull qt3support qt4 quicktime readline reflection reiserfs rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient sms sndfile snmp soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora thinkpad threads thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit wifi win32codecs wmf wxwidgets x264 x86 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0 ac97_codec emu10k1 emu10k1x" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon" DVB_CARDS="usb-wt220u" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev synaptics " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="radeon vesa displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
(In reply to comment #0) > Today 'emerge world' started with downgrading dev-libs/gmp from 5.0.1 to 4.3.2. [ .. ] > (dev-libs/gmp-5.0.1, ebuild scheduled for merge) conflicts with > <dev-libs/gmp-5.0 required by (sci-mathematics/axiom-201005, installed) [ .. ] > PORTDIR_OVERLAY="/var/lib/layman/arcon /var/lib/layman/java-overlay > /var/lib/layman/lordvan /var/lib/layman/pro-audio /var/lib/layman/science > /var/lib/layman/sunrise /var/lib/layman/x11 /usr/local/portage /var/lib/cpan" > SYNC="rsync://rsync.gentoo.org/gentoo-portage" Downgrade of gmp is *note supported*. And note that sci-mathematics/axiom-201005 is *not in portage*. I'm taking a educated guess that this is a broken ebuild in sciene-overlay and it should be fixed asap, so moving to axiom maintainers ->
(In reply to comment #1) > Downgrade of gmp is *note supported*. And note that Heh. Seems to be bad morning for me, that should say "*not*" > I'm taking a educated guess that this is a broken ebuild in sciene-overlay and And this one "science-overlay".
PMasked in the overlay, so this should not happen again. For further development please see bug 336789.
The subsequent revdep-rebuild comes until: root@thinkpad:/root(53)# revdep-rebuild * Configuring search environment for revdep-rebuild * Checking reverse dependencies * Packages containing binaries and libraries broken by a package update * will be emerged. * Collecting system binaries and libraries * Generated new 1_files.rr * Collecting complete LD_LIBRARY_PATH * Generated new 2_ldpath.rr * Checking dynamic linking consistency * broken /bin/expr (requires libgmp.so.10) [ 3% ] * broken /usr/bin/autogen (requires libgmp.so.10) * broken /usr/bin/balsa (requires libgmp.so.10) [ 8% ] * broken /usr/bin/factor (requires libgmp.so.10) [ 10% ] * broken /usr/bin/genius (requires libgmp.so.10) * broken /usr/bin/glpsol (requires libgmp.so.10) [ 11% ] * broken /usr/bin/gnome-genius (requires libgmp.so.10) [ 20% ] * broken /usr/bin/parrot (requires libgmp.so.10) * broken /usr/bin/parrot_debugger (requires libgmp.so.10) * broken /usr/bin/pbc_disassemble (requires libgmp.so.10) * broken /usr/bin/pbc_dump (requires libgmp.so.10) * broken /usr/bin/pbc_merge (requires libgmp.so.10) [ 23% ] * broken /usr/bin/rdfproc (requires libgmp.so.10) * broken /usr/bin/redland-db-upgrade (requires libgmp.so.10) [ 26% ] * broken /usr/bin/sol (requires libgmp.so.10) [ 33% ] * broken /usr/lib/apache2/modules/mod_ssl.so (requires libgmp.so.10) [ 36% ] * broken /usr/lib/engines/libgmp.so (requires libgmp.so.10) [ 37% ] * broken /usr/libexec/gcc/avr/4.3.3/cc1 (requires libgmp.so.10) * broken /usr/libexec/gcc/avr/4.3.3/cc1plus (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.4.4/cc1 (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.4.4/cc1obj (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.4.4/cc1plus (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.4.4/f951 (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.4.4/jc1 (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.5.1/cc1 (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.5.1/cc1obj (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.5.1/cc1plus (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.5.1/f951 (requires libgmp.so.10) * broken /usr/libexec/gcc/i686-pc-linux-gnu/4.5.1/jc1 (requires libgmp.so.10) [ 39% ] * broken /usr/libexec/TeXmacs/bin/texmacs.bin (requires libgmp.so.10) [ 40% ] * broken /usr/lib/gcj-4.4.4-10/libjavamath.so (requires libgmp.so.10) * broken /usr/lib/gcj-4.5.1-11/libjavamath.so (requires libgmp.so.10) [ 58% ] * broken /usr/lib/libbotan-1.8.2.so (requires libgmp.so.10) [ 60% ] * broken /usr/lib/libgeda.so.38.0.1 (requires libgmp.so.10) [ 61% ] * broken /usr/lib/libglpk.so.0.29.0 (requires libgmp.so.10) [ 62% ] * broken /usr/lib/libguile-cairo.so.0.0.0 (requires libgmp.so.10) * broken /usr/lib/libguile-gnome-gobject-2.so.0.0.0 (requires libgmp.so.10) * broken /usr/lib/libguile.so.17.3.1 (requires libgmp.so.10) * broken /usr/lib/libguile-srfi-srfi-60-v-2.so.2.0.2 (requires libgmp.so.10) * broken /usr/lib/libgw-guile-gnome-glib.so.0.0.0 (requires libgmp.so.10) [ 63% ] * broken /usr/lib/libkdeinit4_kcalc.so (requires libgmp.so.10) [ 65% ] * broken /usr/lib/libmpc.so.2.0.0 (requires libgmp.so.10) * broken /usr/lib/libmpfr.so.4.0.0 (requires libgmp.so.10) [ 66% ] * broken /usr/lib/libparrot.so.2.7.0 (requires libgmp.so.10) * broken /usr/lib/librdf.so.0.0.0 (requires libgmp.so.10) [ 78% ] * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/bit_ops.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/debug_ops.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/deprecated_ops.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/dynlexpad.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/file.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/gziphandle.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/io_ops.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/libglutcb.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/math_ops.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/obscure_ops.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/os.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/perl6_group.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/perl6_ops.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/rational.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/sys_ops.so (requires libgmp.so.10) * broken /usr/lib/parrot-0.4.6/2.7.0/dynext/trans_ops.so (requires libgmp.so.10) [ 80% ] * broken /usr/lib/php5/bin/php (requires libgmp.so.10) * broken /usr/lib/php5/bin/php-cgi (requires libgmp.so.10) [ 81% ] * broken /usr/lib/pulse-0.9.21/modules/libraop.so (requires libgmp.so.10) * broken /usr/lib/pulse-0.9.21/modules/module-raop-sink.so (requires libgmp.so.10) [ 82% ] * broken /usr/lib/python2.6/site-packages/Crypto/PublicKey/_fastmath.so (requires libgmp.so.10) [ 86% ] * broken /usr/lib/redland/librdf_storage_mysql.so (requires libgmp.so.10) * broken /usr/lib/redland/librdf_storage_postgresql.so (requires libgmp.so.10) * broken /usr/lib/redland/librdf_storage_sqlite.so (requires libgmp.so.10) * broken /usr/lib/redland/librdf_storage_virtuoso.so (requires libgmp.so.10) [ 97% ] * broken /usr/sbin/ab (requires libgmp.so.10) [ 100% ] * Generated new 3_broken.rr * Assigning files to packages At this point it seems to hang. Yes axiom-201005 is from the science overlay: root@thinkpad:/root(2)# emerge -pvD sci-mathematics/axiom These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild R ] sci-mathematics/axiom-201005 0 kB [1] Total: 1 package (1 reinstall), Size of downloads: 0 kB Portage tree and overlays: [0] /usr/portage [1] /var/lib/layman/science It was installed 11 days ago. If a downgrade of package can break the system (glibc, gmp, etc), it would be good, if something like a security question would be included. It is quite uncomfortable, if a 'emerge world' breaks the system.
Your gcc must be broken now if it's linked against gmp-5. You need a binary package of gmp-5 to revive that machine. Email me if you want me to make one for you, but you should find it on the binhost too...
(In reply to comment #5) > Your gcc must be broken now if it's linked against gmp-5. You need a binary > package of gmp-5 to revive that machine. Email me if you want me to make one > for you, but you should find it on the binhost too... > I was also burned by this dev-libs/gmp downgrade issue. I was able to emerge =dev-libs/gmp-5.0.1 again after a simple ln -s /usr/lib/libgmp.so.3 /usr/lib/libgmp.so.10. I still need to do more testing, but I think this brought my system back.
