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Bug 328833 - dev-python/numpy-1.4.1 on alpha - numpy/core/src/npymath/ieee754.c.src:132: error: storage size of ‘ux’ isn’t known
Summary: dev-python/numpy-1.4.1 on alpha - numpy/core/src/npymath/ieee754.c.src:132: e...
Status: RESOLVED LATER
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: Alpha Linux
: High normal (vote)
Assignee: Gentoo Science Related Packages
URL: http://dev.gentoo.org/~klausman/numpy...
Whiteboard:
Keywords:
: 330917 (view as bug list)
Depends on:
Blocks: 326251
  Show dependency tree
 
Reported: 2010-07-18 16:53 UTC by Tobias Klausmann (RETIRED)
Modified: 2010-09-10 12:45 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Tobias Klausmann (RETIRED) gentoo-dev 2010-07-18 16:53:36 UTC
Portage 2.1.8.3 (default/linux/alpha/10.0/server, gcc-4.4.4, glibc-2.11.2-r0, 2.6.33 alpha)
=================================================================
System uname: Linux-2.6.33-alpha-EV68AL-with-gentoo-2.0.1
Timestamp of tree: Sun, 18 Jul 2010 01:15:01 +0000
app-shells/bash:     4.1_p7
dev-lang/python:     2.6.5-r2, 3.1.2-r3
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.1-r1
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.65-r1
sys-devel/automake:  1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.1.2, 4.2.4-r1, 4.4.4-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.10
virtual/os-headers:  2.6.34
ACCEPT_KEYWORDS="alpha ~alpha"
ACCEPT_LICENSE="* -@EULA"
CBUILD="alpha-unknown-linux-gnu"
CFLAGS="-mieee -pipe -O2 -mcpu=ev67"
CHOST="alpha-unknown-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/udev/rules.d"
CXXFLAGS="-mieee -pipe -O2 -mcpu=ev67"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch userpriv usersandbox"
GENTOO_MIRRORS="http://gentoo.tiscali.nl/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo http://mirror.netcologne.de/gentoo/"
LC_ALL="en_US.utf8"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/space/portage"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.de.gentoo.org/gentoo-portage"
USE="acl alpha apache2 bash-completion berkdb bzip2 cli cracklib crypt cups cxx dri fortran ftp gdbm gpm iconv mmap modules mudflap mysql ncurses nls nptl nptlonly offensive pam pcre perl pppd python readline recode reflection session sharedmem snmp sockets spl ssl sysfs tcpd truetype unicode vim vim-pager xml xorg zlib" ALSA_CARDS="ali5451 als4000 bt87x ca0106 cmipci emu10k1 ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 maestro3 trident usb-audio via82xx ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS


compiling C sources
C compiler: alpha-unknown-linux-gnu-gcc -pthread -mieee -pipe -O2 -mcpu=ev67 -fPIC

creating build-2.6/temp.linux-alpha-2.6
creating build-2.6/temp.linux-alpha-2.6/build-2.6
creating build-2.6/temp.linux-alpha-2.6/build-2.6/src.linux-alpha-2.6
creating build-2.6/temp.linux-alpha-2.6/build-2.6/src.linux-alpha-2.6/numpy
creating build-2.6/temp.linux-alpha-2.6/build-2.6/src.linux-alpha-2.6/numpy/core
creating build-2.6/temp.linux-alpha-2.6/build-2.6/src.linux-alpha-2.6/numpy/core/src
creating build-2.6/temp.linux-alpha-2.6/build-2.6/src.linux-alpha-2.6/numpy/core/src/npymath
compile options: '-Inumpy/core/include -Ibuild-2.6/src.linux-alpha-2.6/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.6 -Ibuild-2.6/src.linux-alpha-2.6/numpy/core/src/multiarray -Ibuild-2.6/src.linux-alpha-2.6/numpy/core/src/umath -c'
alpha-unknown-linux-gnu-gcc: build-2.6/src.linux-alpha-2.6/numpy/core/src/npymath/npy_math_complex.c
alpha-unknown-linux-gnu-gcc: build-2.6/src.linux-alpha-2.6/numpy/core/src/npymath/ieee754.c
numpy/core/src/npymath/ieee754.c.src: In function ‘_nextl’:
numpy/core/src/npymath/ieee754.c.src:132: error: storage size of ‘ux’ isn’t known
numpy/core/src/npymath/ieee754.c.src:136: error: ‘LDBL_EXP_INDEX’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:136: error: (Each undeclared identifier is reported only once
numpy/core/src/npymath/ieee754.c.src:136: error: for each function it appears in.)
numpy/core/src/npymath/ieee754.c.src:136: error: ‘LDBL_EXP_MASK’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:136: error: ‘LDBL_EXP_SHIFT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANH_INDEX’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANH_MASK’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANH_SHIFT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_NBIT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANL_INDEX’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANL_MASK’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANL_SHIFT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:141: error: ‘IEEEl2bitsrep_part’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:144: error: ‘LDBL_SIGN_INDEX’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:144: error: ‘LDBL_SIGN_MASK’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:144: error: ‘LDBL_SIGN_SHIFT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src: In function ‘_nextl’:
numpy/core/src/npymath/ieee754.c.src:132: error: storage size of ‘ux’ isn’t known
numpy/core/src/npymath/ieee754.c.src:136: error: ‘LDBL_EXP_INDEX’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:136: error: (Each undeclared identifier is reported only once
numpy/core/src/npymath/ieee754.c.src:136: error: for each function it appears in.)
numpy/core/src/npymath/ieee754.c.src:136: error: ‘LDBL_EXP_MASK’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:136: error: ‘LDBL_EXP_SHIFT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANH_INDEX’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANH_MASK’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANH_SHIFT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_NBIT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANL_INDEX’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANL_MASK’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:137: error: ‘LDBL_MANL_SHIFT’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:141: error: ‘IEEEl2bitsrep_part’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:144: error: ‘LDBL_SIGN_INDEX’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:144: error: ‘LDBL_SIGN_MASK’ undeclared (first use in this function)
numpy/core/src/npymath/ieee754.c.src:144: error: ‘LDBL_SIGN_SHIFT’ undeclared (first use in this function)
error: Command "alpha-unknown-linux-gnu-gcc -pthread -mieee -pipe -O2 -mcpu=ev67 -fPIC -Inumpy/core/include -Ibuild-2.6/src.linux-alpha-2.6/numpy/core/include/numpy -Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/include -I/usr/include/python2.6 -Ibuild-2.6/src.linux-alpha-2.6/numpy/core/src/multiarray -Ibuild-2.6/src.linux-alpha-2.6/numpy/core/src/umath -c build-2.6/src.linux-alpha-2.6/numpy/core/src/npymath/ieee754.c -o build-2.6/temp.linux-alpha-2.6/build-2.6/src.linux-alpha-2.6/numpy/core/src/npymath/ieee754.o" failed with exit status 1

Full build log is at $URL.
Comment 1 Jeroen Roovers (RETIRED) gentoo-dev 2010-08-03 02:33:37 UTC
*** Bug 330917 has been marked as a duplicate of this bug. ***
Comment 2 François Bissey 2010-09-09 00:34:52 UTC
There is a tentative fix in numpy repo for this:
http://projects.scipy.org/numpy/changeset/8526
Comment 3 Arfrever Frehtes Taifersar Arahesis (RETIRED) gentoo-dev 2010-09-09 17:21:18 UTC
This change is included in >=dev-python/numpy-1.5.0.
Alpha team: Could you verify if >=dev-python/numpy-1.5.0-r1 is fixed?
Comment 4 Kazuyoshi Furutaka 2010-09-10 10:09:23 UTC
(In reply to comment #3)
> This change is included in >=dev-python/numpy-1.5.0.
> Alpha team: Could you verify if >=dev-python/numpy-1.5.0-r1 is fixed?

Not a member of the team, but the build of =dev-python/numpy-1.5.0-r1 OK
on my alpha.

Kazuyoshi
Comment 5 Tobias Klausmann (RETIRED) gentoo-dev 2010-09-10 11:49:40 UTC
Same from me: builds and passes its test suite nicely on our dev machine. 

@kazuyoshi: what kind of machine are you using for testing?
Comment 6 Kazuyoshi Furutaka 2010-09-10 11:56:51 UTC
(In reply to comment #5)
> @kazuyoshi: what kind of machine are you using for testing?

It's a 13-year-old 164LX:

Portage 2.1.9.2 (default/linux/alpha/10.0/desktop/gnome, gcc-4.4.4, glibc-2.11.2-r0, 2.6.30-gentoo-r6 alpha)
=================================================================
System uname: Linux-2.6.30-gentoo-r6-alpha-EV56-with-gentoo-2.0.1
Timestamp of tree: Fri, 10 Sep 2010 11:30:01 +0000
ccache version 2.4 [disabled]
app-shells/bash:     4.1_p7
dev-lang/python:     2.6.5-r3, 3.1.2-r4
dev-util/ccache:     2.4-r8
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1
sys-apps/openrc:     0.6.2
sys-apps/sandbox:    2.3-r1
sys-devel/autoconf:  2.13, 2.67
sys-devel/automake:  1.7.9-r2, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.3.5, 4.4.4-r1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.10
sys-devel/make:      3.81-r2
virtual/os-headers:  2.6.35 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="alpha ~alpha"
ACCEPT_LICENSE="* -@EULA"
CBUILD="alpha-unknown-linux-gnu"
CFLAGS="-mieee -pipe -O2 -mcpu=ev56 -mlarge-data"
CHOST="alpha-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/portage /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-mieee -pipe -O2 -mcpu=ev56 -mlarge-data"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="http://gentoo.gg3.net/ ftp://gg3.net/pub/linux/gentoo/ ftp://ftp.ecc.u-tokyo.ac.jp/GENTOO http://gentoo.channelx.biz/ http://ftp.jaist.ac.jp/pub/Linux/Gentoo/ ftp://ftp.jaist.ac.jp/pub/Linux/Gentoo/ http://ftp.iij.ad.jp/pub/linux/gentoo/ ftp://ftp.iij.ad.jp/pub/linux/gentoo/ "
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--no-relax"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X a52 aac acl acpi alpha alsa assistant berkdb branding bzip2 cairo cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr eds emacs encode evo exif fam ffmpeg firefox flac fortran gdbm gdu gif gnome gnome-keyring gpm gstreamer gtk hal iconv ipv6 jpeg kde latex lcms ldap libnotify mad mikmod mng modules motif mp3 mp4 mpeg mudflap nautilus ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf perl png policykit ppds pppd python qt3support qt4 readline reflection sdl session spell ssl startup-notification svg sysfs tcpd tiff tk truetype unicode usb vorbis webkit wxwidgets x264 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 bt87x ca0106 cmipci emu10k1 ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 maestro3 trident usb-audio via82xx ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="fbdev glint mach64 mga nv r128 radeon savage tdfx voodoo" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, MAKEOPTS, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Comment 7 Tobias Klausmann (RETIRED) gentoo-dev 2010-09-10 12:01:16 UTC
@Python: the bug this one blocks only mentions 1.4, not 1.5. If you want alpha to stabilize 1.5.0-r1 on alpha instead of 1.4, please note so explicitly.
Comment 8 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2010-09-10 12:25:12 UTC
(In reply to comment #7)
> @Python: the bug this one blocks only mentions 1.4, not 1.5. If you want alpha
> to stabilize 1.5.0-r1 on alpha instead of 1.4, please note so explicitly.

1.5.0-r1 is not ready to go stable. There are few things that need to be sorted out first, e.g. bug 335908. @alpha I think you should pass on bug 326251.

Comment 9 Tobias Klausmann (RETIRED) gentoo-dev 2010-09-10 12:45:53 UTC
I've closed 326251 as we we'll do what xarthisius suggested. If there's a different good reason to pursue 1.5.0 quicker, please open a new bug.

@Kazuyoshi: thanks again for your help.