If you have /usr/X11R6 symlinked to /usr (as it was in gentoo-2005.0), then xorg-x11-6.8 still modifies /usr/X11R6/lib64 to point to ../lib64 and installs itself in /lib64 (since /usr/X11R6/lib64 point to /usr/lib64). The changing of /usr/lib64 will break python (and thus portage) because python looks for files in /usr/lib64/python2.x. emerge --info Portage 2.1-r1 (default-linux/amd64/2005.0, gcc-3.4.6, glibc-2.3.6-r4, 2.6.16-gentoo-r7 x86_64) ================================================================= System uname: 2.6.16-gentoo-r7 x86_64 AMD Athlon(tm) 64 Processor 3200+ Gentoo Base System version 1.6.15 app-admin/eselect-compiler: [Not Present] dev-lang/python: 2.3.5-r2, 2.4.2 dev-python/pycrypto: 2.0.1-r5 dev-util/ccache: [Not Present] dev-util/confcache: [Not Present] sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2 sys-devel/binutils: 2.16.1-r3 sys-devel/gcc-config: 1.3.13-r3 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O3 -funroll-loops -fomit-frame-pointer -pipe -march=k8" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/lib/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/java-config/vms/ /etc/revdep-rebuild /etc/terminfo" CXXFLAGS="-O3 -funroll-loops -fomit-frame-pointer -pipe -march=k8" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks metadata-transfer sandbox sfperms strict" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LANG="sv_SE.ISO-8859-1" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude='/distfiles' --exclude='/local' --exclude='/packages'" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="amd64 X Xaw3d acpi alsa avi berkdb bitmap-fonts bzip2 cdr cli crypt cups dlloader dri dvd dvdr eds emboss encode foomaticdb fortran gnome gpm gstreamer gtk gtk2 imlib ipv6 isdnlog jikes jpeg lzw lzw-tiff mp3 mpeg ncurses nls nptl opengl pam pcre pdflib perl png pppd python qt3 qt4 quicktime readline reflection sdl session slang spell spl ssl tcpd tiff truetype truetype-fonts type1-fonts unicode usb xorg xpm xv zlib elibc_glibc input_devices_keyboard input_devices_mouse input_devices_evdev kernel_linux userland_GNU" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LDFLAGS, LINGUAS, PORTAGE_RSYNC_EXTRA_OPTS
*** This bug has been marked as a duplicate of 132135 ***