emboss-2.8.0-r3.ebuild

emboss-2.8.0-r3.ebuild (text/plain), 1.79 KB, created by Olivier Fisette (RETIRED) on 2004-06-24 20:53:26 UTC

# Copyright 1999-2004 Gentoo Technologies, Inc.
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/app-sci/emboss/emboss-2.8.0-r2.ebuild,v 1.3 2004/06/02 14:12:50 agriffis Exp $

DESCRIPTION="The European Molecular Biology Open Software Suite: EMBOSS is a package of high-quality FREE Open Source software for sequence analysis."
HOMEPAGE="http://www.emboss.org/"
SRC_URI="ftp://ftp.uk.embnet.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
LICENSE="GPL-2 LGPL-2"

SLOT="0"
KEYWORDS="~x86"
IUSE="X png icc no-biodata"

DEPEND="X? ( virtual/x11 )
		png? ( >=sys-libs/zlib-1.1.4
			>=media-libs/libpng-1.2.4
			>=media-libs/libgd-1.8.4
		)
		icc? ( dev-lang/icc )
		app-sci/primer3
		app-sci/clustalw"

PDEPEND="!no-biodata? ( app-sci/aaindex
	app-sci/cutg
	app-sci/prints
	app-sci/prosite
	app-sci/rebase
	app-sci/transfac
	)"

S=${WORKDIR}/EMBOSS-${PV}

src_compile() {
	if use icc; then
		CC=/opt/intel/compiler80/bin/icc
		CXX=/opt/intel/compiler80/bin/icc
	fi
	local EXTRA_CONF
	! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
	! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"

	econf ${EXTRA_CONF} || die
	emake || die
}

src_install() {
	einstall || die
	dodoc AUTHORS COPYING ChangeLog FAQ INSTALL LICENSE README THANKS NEWS

	# Do not install the included prebuilt java emboss client/server interface
	# (jemboss). It will be made available in a separate package.
	rm -r ${D}/usr/share/EMBOSS/jemboss
	rm ${D}/usr/bin/jembossctl

	# Install env file for setting libplplot path.
	insinto /etc/env.d
	doins ${FILESDIR}/22emboss

	# Symlink preinstalled docs to /usr/share.
	dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
	dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
	dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
}