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augustus-2.3.1:20100916-120800.log (text/plain), 6.33 KB, created by Diego Elio Pettenò (RETIRED) on 2010-09-16 14:36:48 UTC

 * CPV:  sci-biology/augustus-2.3.1
 * REPO: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking augustus.2.3.1.src.tar.gz to /var/tmp/portage/sci-biology/augustus-2.3.1/work
>>> Source unpacked in /var/tmp/portage/sci-biology/augustus-2.3.1/work
>>> Preparing source in /var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus ...
make -j14 -C src clean 
make: Entering directory `/var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus/src'
rm -f augustus etraining consensusFinder curve2hints genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o dummy.o commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o  consensus.o exon_seg.o cflags 
make: Leaving directory `/var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus/src'
make -j14 -C src 
make: Entering directory `/var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus/src'
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o genbank.o genbank.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o properties.o properties.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o pp_profile.o pp_profile.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o pp_hitseq.o pp_hitseq.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o pp_scoring.o pp_scoring.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o statemodel.o statemodel.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o namgene.o namgene.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o types.o types.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o gene.o gene.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o evaluation.o evaluation.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o motif.o motif.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o geneticcode.o geneticcode.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o hints.o hints.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o extrinsicinfo.o extrinsicinfo.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o projectio.o projectio.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o intronmodel.o intronmodel.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o exonmodel.o exonmodel.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o igenicmodel.o igenicmodel.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o utrmodel.o utrmodel.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o merkmal.o merkmal.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o vitmatrix.o vitmatrix.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o lldouble.o lldouble.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o commontrain.o commontrain.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o igenictrain.o igenictrain.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o introntrain.o introntrain.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o exontrain.o exontrain.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o utrtrain.o utrtrain.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o dummy.o dummy.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o consensus.o consensus.cc -I../include -I. 
g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o exon_seg.o exon_seg.cc -I../include -I. 
echo "-Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe " > cflags
g++ -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o consensusFinder consensusFinder.cc consensus.o -I../include -I. 
g++ -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o curve2hints curve2hints.cc exon_seg.o -I../include -I. 
g++ -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o dummy.o -I../include -I. 
g++ -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe  -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o -I../include -I. 
cp etraining ../bin
cp augustus ../bin
make: Leaving directory `/var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus/src'
>>> Source compiled.
>>> Test phase [none]: sci-biology/augustus-2.3.1

>>> Install augustus-2.3.1 into /var/tmp/portage/sci-biology/augustus-2.3.1/image/ category sci-biology
>>> Completed installing augustus-2.3.1 into /var/tmp/portage/sci-biology/augustus-2.3.1/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/etraining
   usr/bin/consensusFinder
   usr/bin/curve2hints
   usr/bin/augustus

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/etraining
 * /usr/bin/consensusFinder
 * /usr/bin/curve2hints
 * /usr/bin/augustus