* CPV: sci-biology/augustus-2.3.1 * REPO: gentoo * Maintainer: weaver@gentoo.org sci-biology@gentoo.org * USE: elibc_glibc kernel_linux test userland_GNU x86 >>> Unpacking source... >>> Unpacking augustus.2.3.1.src.tar.gz to /var/tmp/portage/sci-biology/augustus-2.3.1/work >>> Source unpacked in /var/tmp/portage/sci-biology/augustus-2.3.1/work >>> Preparing source in /var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus ... make -j14 -C src clean make: Entering directory `/var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus/src' rm -f augustus etraining consensusFinder curve2hints genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o dummy.o commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o consensus.o exon_seg.o cflags make: Leaving directory `/var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus/src' make -j14 -C src make: Entering directory `/var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus/src' g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o genbank.o genbank.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o properties.o properties.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o pp_profile.o pp_profile.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o pp_hitseq.o pp_hitseq.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o pp_scoring.o pp_scoring.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o statemodel.o statemodel.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o namgene.o namgene.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o types.o types.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o gene.o gene.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o evaluation.o evaluation.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o motif.o motif.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o geneticcode.o geneticcode.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o hints.o hints.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o extrinsicinfo.o extrinsicinfo.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o projectio.o projectio.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o intronmodel.o intronmodel.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o exonmodel.o exonmodel.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o igenicmodel.o igenicmodel.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o utrmodel.o utrmodel.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o merkmal.o merkmal.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o vitmatrix.o vitmatrix.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o lldouble.o lldouble.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o commontrain.o commontrain.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o igenictrain.o igenictrain.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o introntrain.o introntrain.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o exontrain.o exontrain.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o utrtrain.o utrtrain.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o dummy.o dummy.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o consensus.o consensus.cc -I../include -I. g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o exon_seg.o exon_seg.cc -I../include -I. echo "-Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe " > cflags g++ -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o consensusFinder consensusFinder.cc consensus.o -I../include -I. g++ -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o curve2hints curve2hints.cc exon_seg.o -I../include -I. g++ -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o dummy.o -I../include -I. g++ -Wall -Wno-sign-compare -ansi -pedantic -O2 -O2 -pipe -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o -I../include -I. cp etraining ../bin cp augustus ../bin make: Leaving directory `/var/tmp/portage/sci-biology/augustus-2.3.1/work/augustus/src' >>> Source compiled. >>> Test phase [none]: sci-biology/augustus-2.3.1 >>> Install augustus-2.3.1 into /var/tmp/portage/sci-biology/augustus-2.3.1/image/ category sci-biology >>> Completed installing augustus-2.3.1 into /var/tmp/portage/sci-biology/augustus-2.3.1/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/bin/etraining usr/bin/consensusFinder usr/bin/curve2hints usr/bin/augustus * QA Notice: Files built without respecting LDFLAGS have been detected * Please include the following list of files in your report: * /usr/bin/etraining * /usr/bin/consensusFinder * /usr/bin/curve2hints * /usr/bin/augustus