Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 928064 - sci-biology/yass-1.14-r3 - /.../ld: final link failed: bad value
Summary: sci-biology/yass-1.14-r3 - /.../ld: final link failed: bad value
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2024-03-28 16:59 UTC by Toralf Förster
Modified: 2024-04-11 01:30 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,18.74 KB, text/plain)
2024-03-28 16:59 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,48.69 KB, text/plain)
2024-03-28 16:59 UTC, Toralf Förster
Details
environment (environment,75.55 KB, text/plain)
2024-03-28 16:59 UTC, Toralf Förster
Details
etc.clang.tar.xz (etc.clang.tar.xz,1.16 KB, application/x-xz)
2024-03-28 16:59 UTC, Toralf Förster
Details
etc.portage.tar.xz (etc.portage.tar.xz,14.75 KB, application/x-xz)
2024-03-28 16:59 UTC, Toralf Förster
Details
logs.tar.xz (logs.tar.xz,5.80 KB, application/x-xz)
2024-03-28 16:59 UTC, Toralf Förster
Details
qlist-info.txt (qlist-info.txt,108.85 KB, text/plain)
2024-03-28 16:59 UTC, Toralf Förster
Details
sci-biology:yass-1.14-r3:20240328-012000.log (sci-biology:yass-1.14-r3:20240328-012000.log,17.69 KB, text/plain)
2024-03-28 16:59 UTC, Toralf Förster
Details
temp.tar.xz (temp.tar.xz,18.92 KB, application/x-xz)
2024-03-28 16:59 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2024-03-28 16:59:45 UTC
too long lines were shrinked:

x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRIN
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRIN
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRIN
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRIN
x86_64-pc-linux-gnu-gcc  -O3 -pipe -march=native -fno-diagnostics-color  -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -g -o yass align.o assemble.o avl.o display.o global_var.o hash.o kword.o list.o main.o prdyn.o proba.o red_black.o regroup.o threads.o
/usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: yass: hidden symbol `atexit' in /usr/lib64/libc_nonshared.a(atexit.oS) is referenced by DSO
/usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: final link failed: bad value
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:363: yass] Error 1

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_desktop_gnome-20240327-033506

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 18.1.2
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/18/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/18
18.1.2
Python 3.11.8
Available Ruby profiles:
  (none found)
Available Rust versions:
  [1]   rust-bin-1.76.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.10_p7 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.2_p13 [openjdk-bin-21]
Available Java Virtual Machines:
  [1]   openjdk-bin-17 
  [2]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
go version go1.22.1 linux/amd64

  HEAD of ::gentoo
commit e4dfede730b53f63df826b8f18f9bba2ab713af4
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Thu Mar 28 01:04:19 2024 +0000

    2024-03-28 01:04:18 UTC

emerge -qpvO sci-biology/yass
[ebuild  N    ] sci-biology/yass-1.14-r3  USE="dmalloc -lowmem -threads"
Comment 1 Toralf Förster gentoo-dev 2024-03-28 16:59:46 UTC
Created attachment 888933 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-03-28 16:59:47 UTC
Created attachment 888934 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2024-03-28 16:59:48 UTC
Created attachment 888935 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-03-28 16:59:49 UTC
Created attachment 888936 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-03-28 16:59:50 UTC
Created attachment 888937 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-03-28 16:59:50 UTC
Created attachment 888938 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2024-03-28 16:59:52 UTC
Created attachment 888939 [details]
qlist-info.txt
Comment 8 Toralf Förster gentoo-dev 2024-03-28 16:59:52 UTC
Created attachment 888940 [details]
sci-biology:yass-1.14-r3:20240328-012000.log
Comment 9 Toralf Förster gentoo-dev 2024-03-28 16:59:53 UTC
Created attachment 888941 [details]
temp.tar.xz
Comment 10 orbea 2024-04-04 00:41:27 UTC
Doesn't use libtool at all.