Bug 883663 – sci-biology/clustalw-mpi-0.13-r3 - stupid.c: error: implicit declaration of function pforward_pass [-Werror=implicit-function-decl

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2022-11-29 19:16:11 UTC]

  501 |                                                 fgets(line,MAXLINE+1,fin);
      |                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~
mpicc  -pipe -march=native -fno-diagnostics-color -O2 -D_GLIBCXX_ASSERTIONS -Werror=implicit-function-declaration -Werror=implicit-int -c stupid.c
stupid.c: In function mypdiff:
stupid.c:347:17: error: implicit declaration of function pforward_pass [-Werror=implicit-function-declaration]
  347 |                 pforward_pass(midi, t, tl, A, B, N, HH, DD);
      |                 ^~~~~~~~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib_hardened-j4-20221129-050010

  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle"
CC=clang
CXX=clang++
gcc-config -l:
 [1] x86_64-pc-linux-gnu-12 *
clang/llvm (if any):
clang version 15.0.5
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/15
15.0.5
Python 3.10.8
Available Ruby profiles:
  [1]   ruby27 (with Rubygems)
  [2]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.65.0 *
php cli (if any):

  HEAD of ::gentoo
commit b870f76767a67024fdd5574a7d807da03d837651
Author: Repository mirror & CI <[e-mail]>
Date:   Tue Nov 29 18:02:02 2022 +0000

    2022-11-29 18:02:02 UTC

emerge -qpvO sci-biology/clustalw-mpi
[ebuild  N    ] sci-biology/clustalw-mpi-0.13-r3  USE="-mpi-njtree -static-pairalign"

[Comment 1 Toralf Förster 2022-11-29 19:16:12 UTC]

Created attachment 838343 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2022-11-29 19:16:14 UTC]

Created attachment 838345 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2022-11-29 19:16:15 UTC]

Created attachment 838347 [details]
environment

[Comment 4 Toralf Förster 2022-11-29 19:16:16 UTC]

Created attachment 838349 [details]
etc.clang.tar.bz2

[Comment 5 Toralf Förster 2022-11-29 19:16:17 UTC]

Created attachment 838351 [details]
etc.portage.tar.bz2

[Comment 6 Toralf Förster 2022-11-29 19:16:19 UTC]

Created attachment 838353 [details]
sci-biology:clustalw-mpi-0.13-r3:20221129-185501.log

[Comment 7 Toralf Förster 2022-11-29 19:16:20 UTC]

Created attachment 838355 [details]
temp.tar.bz2