too long lines were shrinked: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DPKGDATADIR=\"/usr/share/unafold/\" -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -O3 -c hybrid.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DENERGY=int -DINTEGER -DPRECISION=1000 -DPKGDATADIR=\"/usr/share/unafold/\" -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -O3 -c -o hybrid_min-energy.o `test -f 'energy.c' || echo './'`en x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -DENERGY=int -DINTEGER -DPRECISION=1000 -DPKGDATADIR=\"/usr/share/unafold/\" -pipe -march=native -fno-diagnostics-color -O2 -Werror=implicit-function-declaration -Werror=implicit-int -O3 -c -o hybrid_min-hybrid-min.o `test -f 'hybrid-min.c' || echo energy.c: In function loadStack: energy.c:118:15: error: implicit declaration of function readOrDie [-Werror=implicit-function-declaration] 118 | readOrDie(1, "stack", gFile, "%lf", &stackEnergies[i][j][ii][jj]); | ^~~~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_plasma_systemd-j4-20221002-192609 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-12.2.0 * clang/llvm (if any): clang version 15.0.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/15/bin /usr/lib/llvm/15 15.0.1 Python 3.10.7 Available Ruby profiles: [1] ruby27 (with Rubygems) [2] ruby30 (with Rubygems) * Available Rust versions: [1] rust-bin-1.64.0 * The following VMs are available for generation-2: 1) IcedTea JDK 3.16.0 [icedtea-bin-8] 2) OpenJDK 17.0.5_p5 [openjdk-17] *) Eclipse Temurin JDK 17.0.4.1_p1 [openjdk-bin-17] 4) Eclipse Temurin JDK 8.345_p01 [openjdk-bin-8] Available Java Virtual Machines: [1] icedtea-bin-8 [2] openjdk-17 [3] openjdk-bin-8 [4] openjdk-bin-17 system-vm The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli (if any): GNU Make 4.3 HEAD of ::gentoo commit 1c64bc8148d14b13ff467b49398ec9978f83850c Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Oct 4 06:02:55 2022 +0000 2022-10-04 06:02:54 UTC emerge -qpvO sci-biology/unafold [ebuild N ] sci-biology/unafold-3.8-r1 USE="-custom-cflags"
Created attachment 819505 [details] emerge-info.txt
Created attachment 819508 [details] emerge-history.txt
Created attachment 819511 [details] environment
Created attachment 819514 [details] etc.portage.tar.bz2
Created attachment 819517 [details] logs.tar.bz2
Created attachment 819520 [details] sci-biology:unafold-3.8-r1:20221004-070604.log
Created attachment 819523 [details] temp.tar.bz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=347343bc74b8a7625265a9e5ecfa05fb6b37d664 commit 347343bc74b8a7625265a9e5ecfa05fb6b37d664 Author: David Seifert <soap@gentoo.org> AuthorDate: 2022-10-23 19:18:07 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2022-10-23 19:18:07 +0000 sci-biology/unafold: fix clang 16 build Closes: https://bugs.gentoo.org/875041 Signed-off-by: David Seifert <soap@gentoo.org> .../unafold/files/unafold-3.8-autotools.patch | 41 ++ .../unafold/files/unafold-3.8-clang16.patch | 775 +++++++++++++++++++++ sci-biology/unafold/unafold-3.8-r1.ebuild | 24 +- 3 files changed, 831 insertions(+), 9 deletions(-)
