When trying to update labplot to v2.9.0-r1, emerge fails this way: ===== These are the packages that would be merged, in reverse order: Calculating dependencies... done! [ebuild U ~] sci-visualization/labplot-2.9.0-r1:5::gentoo [2.8.2:5::gentoo] USE="fftw fits handbook hdf5 netcdf -cantor -debug -libcerf -markdown% -matio% -origin% -root -serial -telemetry -test" 20.912 KiB . . . -- Configuring done -- Generating done -- Build files have been written to: /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0_build >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0 ... * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0" * Build directory (BUILD_DIR): "/var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0_build" ninja -v -j16 -l0 ninja: error: '/usr/lib64/libdl.so', needed by 'src/labplot2', missing and no known rule to make it ===== This is my emerge info: ===== Portage 3.0.30 (python 3.9.12-final-0, default/linux/amd64/17.1/desktop/plasma/systemd, gcc-11.2.1, glibc-2.34-r10, 5.15.32-gentoo-r1 x86_64) ================================================================= System uname: Linux-5.15.32-gentoo-r1-x86_64-AMD_Ryzen_7_3700X_8-Core_Processor-with-glibc2.34 KiB Mem: 32871056 total, 7844624 free KiB Swap: 33554428 total, 32637520 free Timestamp of repository gentoo: Tue, 10 May 2022 07:30:01 +0000 Head commit of repository gentoo: 2bc85396f4c0525a57980d891c2ea407c041729f Timestamp of repository 4nykey: Mon, 09 May 2022 20:52:20 +0000 Head commit of repository 4nykey: ac3ca1fcfc2b3617a627349a0aaf96ba26feec7b Timestamp of repository brave-overlay: Tue, 03 May 2022 14:03:59 +0000 Head commit of repository brave-overlay: 0af9d93b9a08739e0e02f6f12e9c90c18fc83b35 Timestamp of repository fol4: Mon, 09 May 2022 20:52:24 +0000 Head commit of repository fol4: 00a74b40701d1cefa5c2d4901e7ca9b5f335d665 Timestamp of repository torbrowser: Mon, 09 May 2022 20:52:14 +0000 Head commit of repository torbrowser: 44db024dacf4a373fc91669b120da87d19accd88 sh bash 5.1_p16 ld GNU ld (Gentoo 2.37_p1 p2) 2.37 app-misc/pax-utils: 1.3.3::gentoo app-shells/bash: 5.1_p16::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.34.0-r9::gentoo dev-lang/python: 3.9.12::gentoo, 3.10.4::gentoo dev-lang/rust-bin: 1.59.0::gentoo dev-util/cmake: 3.22.2::gentoo dev-util/meson: 0.61.4-r2::gentoo sys-apps/baselayout: 2.7-r3::gentoo sys-apps/sandbox: 2.29::gentoo sys-apps/systemd: 250.4-r2::gentoo sys-devel/autoconf: 2.71-r1::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.37_p1-r2::gentoo sys-devel/binutils-config: 5.4.1::gentoo sys-devel/gcc: 11.2.1_p20220115::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/llvm: 13.0.1::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.15-r3::gentoo (virtual/os-headers) sys-libs/glibc: 2.34-r10::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes 4nykey location: /var/db/repos/4nykey sync-type: git sync-uri: https://github.com/gentoo-mirror/4nykey.git masters: gentoo brave-overlay location: /var/db/repos/brave-overlay sync-type: git sync-uri: https://github.com/gentoo-mirror/brave-overlay.git masters: gentoo fol4 location: /var/db/repos/fol4 sync-type: git sync-uri: https://github.com/gentoo-mirror/fol4.git masters: gentoo local location: /var/db/repos/local masters: gentoo priority: 0 torbrowser location: /var/db/repos/torbrowser sync-type: git sync-uri: https://github.com/gentoo-mirror/torbrowser.git masters: gentoo ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=znver2 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/cxoffice/etc/cxoffice.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=znver2 -O2 -pipe" DISTDIR="/var/cache/distfiles" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-march=znver2 -O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=znver2 -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" INSTALL_MASK="/usr/share/locale -/usr/share/locale/es -/usr/share/locale/es_ES -/usr/share/locale/en_US -/usr/share/locale/en /usr/share/gcc-data/x86_64-pc-linux-gnu/*/locale -/usr/share/gcc-data/x86_64-pc-linux-gnu/*/locale/es /usr/share/man/de /usr/share/man/el /usr/share/man/fr /usr/share/man/hu /usr/share/man/ja /usr/share/man/jp /usr/share/man/sk /usr/share/man/zh_TW" LANG="es_ES.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="es_ES es en_US en" MAKEOPTS="-j16" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/bash" USE="X a52 aac aalib acl acpi activities alsa amd64 amr atm bluetooth branding btrfs bzip2 cairo cdda cddb cdr cli contrib crypt cups curl daemon dbus declarative dga djvu dri dts dv dvd dvdr encode exif fbcon ffmpeg fftw flac fontconfig fortran ftp fuse gdbm geolocation gif gimp gmp gnome-keyring gphoto2 gpm grub gstreamer gtk gui iconv icu idn imagemagick imlib ipv6 jack java jbig jpeg jpeg2k kde kwallet lame lapack latex lcms libass libcaca libglvnd libkms libnotify libtirpc lm-sensors lzma lzo mad mmap mng modplug mono mp3 mp4 mpeg mtp multilib musepack nas ncurses network networkmanager nls nptl ogg openal opencl openexr opengl openmp oss pam pango pcre pdf pkcs11 plasma png policykit portaudio postscript ppds qml qt5 rar raw readline ruby samba sasl scanner sdl seccomp semantic-desktop slang smartcard spell split-usr ssl startup-notification svg syslog systemd taglib tcl theora threads tiff tk truetype twolame udev udisks unicode upnp upower usb v4l vaapi vcd vdpau vnc vorbis wavpack wayland widgets wmf wxwidgets x264 xattr xcb xml xmp xv xvid zlib" ABI_X86="64" ADA_TARGET="gnat_2020" ALSA_CARDS="hda-intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon krita" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 f16c fma3 pclmul popcnt rdrand sha sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="synaptics evdev" KERNEL="linux" L10N="es-ES es en-US en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="AArch64 AMDGPU X86 XCore" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26 ruby27" SANE_BACKENDS="epson2 hp" USERLAND="GNU" VIDEO_CARDS="radeonsi amdgpu" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
> ninja: error: '/usr/lib64/libdl.so', needed by 'src/labplot2', missing and no known rule to make it Is this library present on your system? It should be provided by sys-libs/glibc
In glibc 2.34+, it moved. Can you run: grep -rsin "libdl" /usr/lib64/cmake?
(In reply to Sam James from comment #2) > In glibc 2.34+, it moved. Can you run: grep -rsin "libdl" /usr/lib64/cmake? Sure! No answer whatsoever. Empty. Nada.
(In reply to Andrew Ammerlaan from comment #1) > > ninja: error: '/usr/lib64/libdl.so', needed by 'src/labplot2', missing and no known rule to make it > > Is this library present on your system? It should be provided by > sys-libs/glibc It is, but in so.2 version: ===== # locate libdl.so /lib/libdl.so.2 /lib64/libdl.so.2 # =====
Upgrading glibc to version 2.35 should fix this build problem, but please be aware that downgrading glibc is non-trivial (probably best to not attempt this), so if you do accept unstable keywords for glibc you will probably be stuck on unstable glibc for a while. To properly fix this to also build with <glibc-2.35 we are going to need some kind of patch. I'll look into this later when I have more time.
(In reply to Andrew Ammerlaan from comment #5) > Upgrading glibc to version 2.35 should fix this build problem, but please be > aware that downgrading glibc is non-trivial (probably best to not attempt > this), so if you do accept unstable keywords for glibc you will probably be > stuck on unstable glibc for a while. > > To properly fix this to also build with <glibc-2.35 we are going to need > some kind of patch. I'll look into this later when I have more time. Thanks for the warning. Since I don't want to compromise my system because of this, I will mask labplot-2.9.0-r1 until it is compilable with stable glibc.
(In reply to urcindalo from comment #6) > Thanks for the warning. Since I don't want to compromise my system because > of this, I will mask labplot-2.9.0-r1 until it is compilable with stable > glibc. Just to double check if this issue is specific to 2.9.0 or not. If you try to recompile version 2.8.2 do you get the same error with glibc-2.34?
(In reply to Andrew Ammerlaan from comment #7) > (In reply to urcindalo from comment #6) > > Thanks for the warning. Since I don't want to compromise my system because > > of this, I will mask labplot-2.9.0-r1 until it is compilable with stable > > glibc. > > Just to double check if this issue is specific to 2.9.0 or not. If you try > to recompile version 2.8.2 do you get the same error with glibc-2.34? You're right. I just got the same error trying to recompile V2.8.2.
(In reply to urcindalo from comment #8) > You're right. I just got the same error trying to recompile V2.8.2. Alright, thanks for checking!
We're still missing a full build.log from you. Please always attach one.
Created attachment 779513 [details] build.log Here you are the build.log.
Created attachment 779516 [details] build.log from reporting box And here you are the build.log from the box where I first saw this issue.
- What version of sci-libs/hdf5? - grep -rsin "dl" /usr/lib64/cmake - grep -rsin "ldl" /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work - grep -rsin "libdl" /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work - Can you try turning off the various USE flags you have on and see which one seems to cause it, if any?
Thanks! I'm going to answer one question at a message: (In reply to Sam James from comment #13) > - What version of sci-libs/hdf5? $ eix -I hdf5 [I] sci-libs/hdf5 Available versions: 1.10.5(0/1.10.5) 1.10.5-r1(0/1.10.5) ~1.12.1(0/1.12.1)^t ~1.12.1-r1(0/1.12.1)^t ~1.12.2-r1(0/1.12.2)^t {cxx debug doc examples fortran +hl mpi ros3 szip test threads unsupported zlib} Installed versions: 1.10.5-r1(0/1.10.5)(22:05:36 17/04/22)(fortran hl szip zlib -cxx -debug -examples -mpi -threads -unsupported)
Created attachment 783722 [details] grep -rsin "dl" /usr/lib64/cmake grep -rsin "dl" /usr/lib64/cmake
> - Can you try turning off the various USE flags you have on and see which > one seems to cause it, if any? The culprit is USE="netcdf". * I installed labplot without any custom flags -> only fftw and handbook got selected by default -> installed perfectly * I then added fits and hdf5 -> installed perfectly. * I added netcdf -> problem arose. * I removed fits and hdf5 and left only fftw and handbook (default) and netcdf -> same problem arose. In the next messages I answer the remaining questions.
> - grep -rsin "ldl" /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work # grep -rsin "ldl" /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0_build/build.ninja:3621: LINK_LIBRARIES = src/liblabplot2lib.a /usr/lib64/libKF5KIOFileWidgets.so.5.92.0 /usr/lib64/libKF5Bookmarks.so.5.92.0 /usr/lib64/libKF5NewStuff.so.5.92.0 /usr/lib64/libKF5KIOWidgets.so.5.92.0 /usr/lib64/libKF5Solid.so.5.92.0 /usr/lib64/libKF5KIOGui.so.5.92.0 /usr/lib64/libKF5KIOCore.so.5.92.0 /usr/lib64/libKF5Crash.so.5.92.0 /usr/lib64/libKF5JobWidgets.so.5.92.0 /usr/lib64/libKF5WindowSystem.so.5.92.0 /usr/lib64/libX11.so /usr/lib64/libKF5TextWidgets.so.5.92.0 /usr/lib64/libKF5Completion.so.5.92.0 /usr/lib64/libKF5SonnetUi.so.5.92.0 /usr/lib64/libKF5XmlGui.so.5.92.0 /usr/lib64/libKF5IconThemes.so.5.92.0 /usr/lib64/libKF5ConfigWidgets.so.5.92.0 /usr/lib64/libKF5WidgetsAddons.so.5.92.0 /usr/lib64/libKF5Codecs.so.5.92.0 /usr/lib64/libKF5ConfigGui.so.5.92.0 /usr/lib64/libKF5Auth.so.5.92.0 /usr/lib64/libKF5AuthCore.so.5.92.0 /usr/lib64/libKF5Service.so.5.92.0 /usr/lib64/libKF5ItemViews.so.5.92.0 /usr/lib64/libKF5NewStuffCore.so.5.92.0 /usr/lib64/libKF5Archive.so.5.92.0 /usr/lib64/libKF5ConfigCore.so.5.92.0 /usr/lib64/libQt5DBus.so.5.15.3 /usr/lib64/libKF5I18n.so.5.92.0 /usr/lib64/libKF5CoreAddons.so.5.92.0 /usr/lib64/libQt5Xml.so.5.15.3 /usr/lib64/libKF5Attica.so.5.92.0 /usr/lib64/libQt5Svg.so.5.15.3 /usr/lib64/libQt5PrintSupport.so.5.15.3 /usr/lib64/libQt5Widgets.so.5.15.3 /usr/lib64/libQt5Sql.so.5.15.3 /usr/lib64/libgsl.so /usr/lib64/libgslcblas.so /usr/lib64/libpoppler.so /usr/lib64/libpoppler-qt5.so /usr/lib64/libfftw3.so /usr/lib64/libnetcdf.so.19 /usr/lib64/libhdf5_hl.so /usr/lib64/libhdf5.so /usr/lib64/libsz.so -ldl -lm /usr/lib64/libcurl.so /usr/lib64/libzip.so -lz /usr/lib64/libKF5SyntaxHighlighting.so.5.92.0 /usr/lib64/libQt5Network.so.5.15.3 /usr/lib64/libQt5Gui.so.5.15.3 /usr/lib64/libQt5Core.so.5.15.3 /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:449: settings.intensityThresholdLow = lowerLimit; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:460: settings.foregroundThresholdLow = lowerLimit; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:471: settings.hueThresholdLow = lowerLimit; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:482: settings.saturationThresholdLow = lowerLimit; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:493: settings.valueThresholdLow = lowerLimit; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:565: ssIntensity->setSpan(settings.intensityThresholdLow, settings.intensityThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:566: ssForeground->setSpan(settings.foregroundThresholdLow, settings.foregroundThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:567: ssHue->setSpan(settings.hueThresholdLow, settings.hueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:568: ssSaturation->setSpan(settings.saturationThresholdLow, settings.saturationThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:569: ssValue->setSpan(settings.valueThresholdLow, settings.valueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:570: gvIntensity->setSpan(settings.intensityThresholdLow, settings.intensityThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:571: gvForeground->setSpan(settings.foregroundThresholdLow, settings.foregroundThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:572: gvHue->setSpan(settings.hueThresholdLow, settings.hueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:573: gvSaturation->setSpan(settings.saturationThresholdLow, settings.saturationThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:574: gvValue->setSpan(settings.valueThresholdLow, settings.valueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:625: ssIntensity->setSpan(m_image->settings().intensityThresholdLow, m_image->settings().intensityThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:626: ssForeground->setSpan(m_image->settings().foregroundThresholdLow, m_image->settings().foregroundThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:627: ssHue->setSpan(m_image->settings().hueThresholdLow, m_image->settings().hueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:628: ssSaturation->setSpan(m_image->settings().saturationThresholdLow, m_image->settings().saturationThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:629: ssValue->setSpan(m_image->settings().valueThresholdLow, m_image->settings().valueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:630: gvIntensity->setSpan(m_image->settings().intensityThresholdLow, m_image->settings().intensityThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:631: gvForeground->setSpan(m_image->settings().foregroundThresholdLow, m_image->settings().foregroundThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:632: gvHue->setSpan(m_image->settings().hueThresholdLow, m_image->settings().hueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:633: gvSaturation->setSpan(m_image->settings().saturationThresholdLow, m_image->settings().saturationThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/kdefrontend/widgets/DatapickerImageWidget.cpp:634: gvValue->setSpan(m_image->settings().valueThresholdLow, m_image->settings().valueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/worksheet/WorksheetElementContainer.cpp:237:// QVector<WorksheetElement*> childList = q->children<WorksheetElement>(AbstractAspect::IncludeHidden | AbstractAspect::Compress); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/worksheet/WorksheetElementContainer.cpp:238:// foreach (const WorksheetElement* elem, childList) /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/ImageEditor.cpp:327: return pixelIsOn(value, settings.intensityThresholdLow, settings.intensityThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/ImageEditor.cpp:329: return pixelIsOn(value, settings.foregroundThresholdLow, settings.foregroundThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/ImageEditor.cpp:331: return pixelIsOn(value, settings.hueThresholdLow, settings.hueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/ImageEditor.cpp:333: return pixelIsOn(value, settings.saturationThresholdLow, settings.saturationThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/ImageEditor.cpp:335: return pixelIsOn(value, settings.valueThresholdLow, settings.valueThresholdHigh); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.h:49: int intensityThresholdLow{20}; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.h:51: int foregroundThresholdLow{30}; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.h:53: int hueThresholdLow{0}; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.h:55: int saturationThresholdLow{30}; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.h:57: int valueThresholdLow{30}; /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:90: d->settings.foregroundThresholdLow = group.readEntry("ForegroundThresholdLow", 30); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:92: d->settings.hueThresholdLow = group.readEntry("HueThresholdLow", 0); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:94: d->settings.intensityThresholdLow = group.readEntry("IntensityThresholdLow", 20); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:96: d->settings.saturationThresholdLow = group.readEntry("SaturationThresholdLow", 30); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:98: d->settings.valueThresholdLow = group.readEntry("ValueThresholdLow", 30); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:458: writer->writeAttribute( "foregroundThresholdLow", QString::number(d->settings.foregroundThresholdLow) ); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:460: writer->writeAttribute( "hueThresholdLow", QString::number(d->settings.hueThresholdLow) ); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:462: writer->writeAttribute( "intensityThresholdLow", QString::number(d->settings.intensityThresholdLow) ); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:464: writer->writeAttribute( "saturationThresholdLow", QString::number(d->settings.saturationThresholdLow) ); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:466: writer->writeAttribute( "valueThresholdLow", QString::number(d->settings.valueThresholdLow) ); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:608: READ_INT_VALUE("foregroundThresholdLow", settings.foregroundThresholdLow, int); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:610: READ_INT_VALUE("hueThresholdLow", settings.hueThresholdLow, int); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:612: READ_INT_VALUE("intensityThresholdLow", settings.intensityThresholdLow, int); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:614: READ_INT_VALUE("saturationThresholdLow", settings.saturationThresholdLow, int); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/datapicker/DatapickerImage.cpp:616: READ_INT_VALUE("valueThresholdLow", settings.valueThresholdLow, int); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/cantorWorksheet/CantorWorksheet.cpp:51: KPluginLoader oldLoader(QLatin1String("cantorpart")); // old path /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/cantorWorksheet/CantorWorksheet.cpp:57: factory = oldLoader.factory(); /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/cantorWorksheet/CantorWorksheet.cpp:63: WARN("Failed to load Cantor plugins; file name: " << STDSTRING(oldLoader.fileName())) /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/src/backend/cantorWorksheet/CantorWorksheet.cpp:64: WARN("Error message: " << STDSTRING(oldLoader.errorString())) /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/data/datasets/DASL.json:615: "description": "The ranges inhabited by the Indian gharial\ncrocodile and the Australian saltwater crocodile overlap in\nBangladesh. Suppose a very large crocodile skeleton is found\nthere, and we wish to determine the species of the animal.\nWildlife scientists have measured the lengths of the heads\nand the complete bodies of several crocs (in centimeters) of\neach species.", /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0/data/datasets/DASL.json:629: "description": "Wildlife researchers monitor many wildlife populations by taking aerial photographs. Can they estimate the weights of alligators accurately from the air? Here are data on the Weight of alligators (in pounds) and their Length (in inches).",
> - grep -rsin "libdl" /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work # grep -rsin "libdl" /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work /var/tmp/portage/sci-visualization/labplot-2.9.0-r1/work/labplot-2.9.0_build/build.ninja:3618:build src/labplot2: CXX_EXECUTABLE_LINKER__labplot2_relwithdebinfo src/CMakeFiles/labplot2.dir/labplot2_autogen/mocs_compilation.cpp.o src/CMakeFiles/labplot2.dir/kdefrontend/LabPlot.cpp.o | src/liblabplot2lib.a /usr/lib64/libX11.so /usr/lib64/libgsl.so /usr/lib64/libgslcblas.so /usr/lib64/libpoppler.so /usr/lib64/libpoppler-qt5.so /usr/lib64/libfftw3.so /usr/lib64/libhdf5_hl.so /usr/lib64/libhdf5.so /usr/lib64/libsz.so /usr/lib64/libdl.so /usr/lib64/libm.so /usr/lib64/libcurl.so /usr/lib64/libzip.so /usr/lib64/libz.so || src/labplot2_autogen src/labplot2_autogen_timestamp_deps src/liblabplot2lib.a /usr/lib64/libKF5KIOFileWidgets.so.5.92.0 /usr/lib64/libKF5Bookmarks.so.5.92.0 /usr/lib64/libKF5NewStuff.so.5.92.0 /usr/lib64/libKF5KIOWidgets.so.5.92.0 /usr/lib64/libKF5Solid.so.5.92.0 /usr/lib64/libKF5KIOGui.so.5.92.0 /usr/lib64/libKF5KIOCore.so.5.92.0 /usr/lib64/libKF5Crash.so.5.92.0 /usr/lib64/libKF5JobWidgets.so.5.92.0 /usr/lib64/libKF5WindowSystem.so.5.92.0 /usr/lib64/libKF5TextWidgets.so.5.92.0 /usr/lib64/libKF5Completion.so.5.92.0 /usr/lib64/libKF5SonnetUi.so.5.92.0 /usr/lib64/libKF5XmlGui.so.5.92.0 /usr/lib64/libKF5IconThemes.so.5.92.0 /usr/lib64/libKF5ConfigWidgets.so.5.92.0 /usr/lib64/libKF5WidgetsAddons.so.5.92.0 /usr/lib64/libKF5Codecs.so.5.92.0 /usr/lib64/libKF5ConfigGui.so.5.92.0 /usr/lib64/libKF5Auth.so.5.92.0 /usr/lib64/libKF5AuthCore.so.5.92.0 /usr/lib64/libKF5Service.so.5.92.0 /usr/lib64/libKF5ItemViews.so.5.92.0 /usr/lib64/libKF5NewStuffCore.so.5.92.0 /usr/lib64/libKF5Archive.so.5.92.0 /usr/lib64/libKF5ConfigCore.so.5.92.0 /usr/lib64/libQt5DBus.so.5.15.3 /usr/lib64/libKF5I18n.so.5.92.0 /usr/lib64/libKF5CoreAddons.so.5.92.0 /usr/lib64/libQt5Xml.so.5.15.3 /usr/lib64/libKF5Attica.so.5.92.0 /usr/lib64/libQt5Svg.so.5.15.3 /usr/lib64/libQt5PrintSupport.so.5.15.3 /usr/lib64/libQt5Widgets.so.5.15.3 /usr/lib64/libQt5Sql.so.5.15.3 /usr/lib64/libnetcdf.so.19 /usr/lib64/libKF5SyntaxHighlighting.so.5.92.0 /usr/lib64/libQt5Network.so.5.15.3 /usr/lib64/libQt5Gui.so.5.15.3 /usr/lib64/libQt5Core.so.5.15.3
(In reply to urcindalo from comment #16) > > - Can you try turning off the various USE flags you have on and see which > > one seems to cause it, if any? > > The culprit is USE="netcdf". > * I installed labplot without any custom flags -> only fftw and handbook got > selected by default -> installed perfectly > * I then added fits and hdf5 -> installed perfectly. > * I added netcdf -> problem arose. > * I removed fits and hdf5 and left only fftw and handbook (default) and > netcdf -> same problem arose. > > In the next messages I answer the remaining questions. Big thanks! Could you try upgrading to netcdf-4.8.1-r2?
(In reply to Sam James from comment #19) > (In reply to urcindalo from comment #16) > > > - Can you try turning off the various USE flags you have on and see which > > > one seems to cause it, if any? > > > > The culprit is USE="netcdf". > > * I installed labplot without any custom flags -> only fftw and handbook got > > selected by default -> installed perfectly > > * I then added fits and hdf5 -> installed perfectly. > > * I added netcdf -> problem arose. > > * I removed fits and hdf5 and left only fftw and handbook (default) and > > netcdf -> same problem arose. > > > > In the next messages I answer the remaining questions. > > Big thanks! Could you try upgrading to netcdf-4.8.1-r2? Yes! Upgrading to netcdf-4.8.1-r2 solves the issue.
We'll consider this fixed then (as it was never a labplot problem).
Technically this bug does not care about bug 851471 since labplot is not stable.
(In reply to Andreas Sturmlechner from comment #22) > Technically this bug does not care about bug 851471 since labplot is not > stable. Meh. It's closed anyway and it might be useful if someone sees it. I don't mind if you remove the dependency.
Nah, as you say it is closed anyway. ;)
