Bug 809221 – sci-libs/h5hut-1.99.13 - h5_hdf5_private.h: error: incompatible type for argument 3 of H5Pset_fapl_mpio

• Status: RESOLVED DUPLICATE of bug 741440
• Product: Gentoo Linux

[Description Toralf Förster 2021-08-20 12:28:39 UTC]

In file included from h5_core_private.h:55,
                 from h5_fcmp.c:6:
h5_hdf5_private.h:937:47: error: incompatible type for argument 3 of ‘H5Pset_fapl_mpio’
  937 |         if ( H5Pset_fapl_mpio (fapl_id, comm, use_gpfs) < 0)
      |                                               ^~~~~~~~
      |                                               |
      |                                               hbool_t {aka _Bool}

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib_hardened-j4-20210817-091447

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.0 *
clang version 12.0.1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
/usr/lib/llvm/12
12.0.1
Python 3.9.6
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
The Glorious Glasgow Haskell Compilation System, version 8.10.4

  HEAD of ::gentoo
commit 751285f4078ad8167c2a49bf107006485a129721
Author: Repository mirror & CI <[e-mail]>
Date:   Fri Aug 20 09:36:29 2021 +0000

    2021-08-20 09:36:28 UTC

emerge -qpvO sci-libs/h5hut
[ebuild  N    ] sci-libs/h5hut-1.99.13

[Comment 1 Toralf Förster 2021-08-20 12:28:41 UTC]

Created attachment 734515 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2021-08-20 12:28:42 UTC]

Created attachment 734518 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2021-08-20 12:28:44 UTC]

Created attachment 734521 [details]
environment

[Comment 4 Toralf Förster 2021-08-20 12:28:45 UTC]

Created attachment 734524 [details]
etc.portage.tar.bz2

[Comment 5 Toralf Förster 2021-08-20 12:28:47 UTC]

Created attachment 734527 [details]
logs.tar.bz2

[Comment 6 Toralf Förster 2021-08-20 12:28:48 UTC]

Created attachment 734530 [details]
sci-libs:h5hut-1.99.13:20210820-095912.log

[Comment 7 Toralf Förster 2021-08-20 12:28:49 UTC]

Created attachment 734533 [details]
temp.tar.bz2

[Comment 8 Larry the Git Cow 2021-10-12 06:57:36 UTC]

The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=35ea7e100c06811630c44ad85a2c48db39494e9c

commit 35ea7e100c06811630c44ad85a2c48db39494e9c
Author:     Sam James <[e-mail]>
AuthorDate: 2021-10-12 06:57:05 +0000
Commit:     Sam James <[e-mail]>
CommitDate: 2021-10-12 06:57:28 +0000

    sci-libs/h5hut: depend on older hdf5lib for now
    
    Doesn't seem to build with newer versions.
    
    Bug: https://bugs.gentoo.org/809221
    Signed-off-by: Sam James <[e-mail]>

 sci-libs/h5hut/{h5hut-1.99.13.ebuild => h5hut-1.99.13-r1.ebuild} | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

[Comment 9 Larry the Git Cow 2021-10-12 07:04:57 UTC]

The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ae5c7d4ff3a91ab692868628d573348ba8cd1b0e

commit ae5c7d4ff3a91ab692868628d573348ba8cd1b0e
Author:     Sam James <[e-mail]>
AuthorDate: 2021-10-12 07:00:22 +0000
Commit:     Sam James <[e-mail]>
CommitDate: 2021-10-12 07:04:48 +0000

    sci-libs/h5hut: add comment to ebuild on < hdf5 dep
    
    Bug: https://bugs.gentoo.org/809221
    Signed-off-by: Sam James <[e-mail]>

 sci-libs/h5hut/h5hut-1.99.13-r1.ebuild | 2 ++
 1 file changed, 2 insertions(+)

[Comment 10 Agostino Sarubbo 2021-10-12 12:55:59 UTC]

*** This bug has been marked as a duplicate of bug 741440 ***