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Bug 794154 - [science overlay] sci-biology/MuSeqBox-3.4.2020 - !!! Couldnt download MuSeqBox-3-4-2020.tar.gz. Aborting.
Summary: [science overlay] sci-biology/MuSeqBox-3.4.2020 - !!! Couldnt download MuSeqB...
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
Depends on:
Reported: 2021-06-04 12:57 UTC by Toralf Förster
Modified: 2021-08-02 13:09 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

emerge-info.txt (emerge-info.txt,18.04 KB, text/plain)
2021-06-04 12:57 UTC, Toralf Förster
emerge-history.txt (emerge-history.txt,187.38 KB, text/plain)
2021-06-04 12:57 UTC, Toralf Förster
etc.portage.tar.bz2 (etc.portage.tar.bz2,11.33 KB, application/x-bzip)
2021-06-04 12:57 UTC, Toralf Förster
sci-biology:MuSeqBox-3.4.2020:20210604-115752.log (sci-biology:MuSeqBox-3.4.2020:20210604-115752.log,2.66 KB, text/plain)
2021-06-04 12:57 UTC, Toralf Förster

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Description Toralf Förster gentoo-dev 2021-06-04 12:57:15 UTC
 * Fetch failed for 'sci-biology/MuSeqBox-3.4.2020', Log file:
 *  '/var/log/portage/sci-biology:MuSeqBox-3.4.2020:20210604-115752.log'
!!! Couldn't download 'MuSeqBox-3-4-2020.tar.gz'. Aborting.


  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome-j3_science-20210531-202156


gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.1.0 *
clang version 12.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
Python 3.9.5
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.52.1 *
The following VMs are available for generation-2:
*)	AdoptOpenJDK 8.292_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4
  [1]   php7.3
  [2]   php7.4
  [3]   php8.0 *
  HEAD of ::gentoo
commit a45a51f1214464ab3a8357980b4cb13116c142eb
Author: Repository mirror & CI <>
Date:   Fri Jun 4 11:06:03 2021 +0000

    2021-06-04 11:06:02 UTC
  HEAD of ::sci
commit abdc869549829df33f2ca5aa2a63663bfc39e2e4
Author: Andrew Ammerlaan <>
Date:   Tue May 25 20:12:58 2021 +0200

    dev-ml/lacaml: add missing dep
    Package-Manager: Portage-3.0.19, Repoman-3.0.3
    Signed-off-by: Andrew Ammerlaan <>
  HEAD of ::science
commit 4b888966f7c6ff0d86ba8b1802457d946c747bb3
Author: Lucas Mitrak <>
Date:   Sun May 30 18:47:25 2021 -0400

    sci-libs/fox: add inherit fortran-2
    Currently, sci-libs/fox does not require a fortran compiler
    to be installed. If sci-libs/fox is emerged without the fortran
    compiler, the configure phase will check for a fortran compiler, and the
    configure phase will fail. For example, the hardened profile disables
    the fortran USE flag in sys-devel/gcc, so sci-libs/fox will fail.
    With this commit, sci-libs/fox will require a fortran compiler
    to be installed.
    Without this commit, sci-libs/fox will fail on any system which does
    not have the fortran compiler, which by default is all hardened profiles.
    This commit was tested in a docker image with dev-util/ebuildtester.
    This commit was written, tested, and submitted by Lucas Mitrak.
    Signed-off-by: Lucas Mitrak <>
    Signed-off-by: Andrew Ammerlaan <>

emerge -qpvO sci-biology/MuSeqBox
[ebuild  N    ] sci-biology/MuSeqBox-3.4.2020
Comment 1 Toralf Förster gentoo-dev 2021-06-04 12:57:17 UTC
Created attachment 713577 [details]
Comment 2 Toralf Förster gentoo-dev 2021-06-04 12:57:18 UTC
Created attachment 713580 [details]
Comment 3 Toralf Förster gentoo-dev 2021-06-04 12:57:20 UTC
Created attachment 713583 [details]
Comment 4 Toralf Förster gentoo-dev 2021-06-04 12:57:21 UTC
Created attachment 713586 [details]
Comment 5 Larry the Git Cow gentoo-dev 2021-08-02 13:09:11 UTC
The bug has been closed via the following commit(s):

commit f27f3a13b1a46abf343ca3ee660732a39a1ccfe5
Author:     Lucas Mitrak <>
AuthorDate: 2021-07-31 19:32:47 +0000
Commit:     Andrew Ammerlaan <>
CommitDate: 2021-08-02 13:09:08 +0000

    sci-biology/MuSeqBox: drop version 3.4.2020
    * Source code for version 3.4.2020 is no longer available
    Package-Manager: Portage-3.0.20, Repoman-3.0.2
    Signed-off-by: Lucas Mitrak <>
    Signed-off-by: Andrew Ammerlaan <>

 sci-biology/MuSeqBox/Manifest                 |  1 -
 sci-biology/MuSeqBox/MuSeqBox-3.4.2020.ebuild | 32 ---------------------------
 2 files changed, 33 deletions(-)