x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../lib -O2 -pipe -march=native -fno-diagnostics-color -O2 -funroll-loops -Wall -std=gnu99 -c -o hmm.o hmm.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../lib -O2 -pipe -march=native -fno-diagnostics-color -O2 -funroll-loops -Wall -std=gnu99 -c -o viz.o viz.c x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -O2 -funroll-loops -Wall -std=gnu99 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o samstat interface.o nuc_code.o misc.o main.o io.o hmm.o viz.o -lm -lpthread /var/tmp/portage/sci-biology/samstat-1.5.1/work/samstat-1.5.1/lib/libks.a /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: misc.o:(.bss+0x0): multiple definition of `rev_nuc_code'; nuc_code.o:(.bss+0x0): first defined here /usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: misc.o:(.bss+0x20): multiple definition of `nuc_code'; nuc_code.o:(.bss+0x20): first defined here ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-libressl_science-20201116-220441 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10.2.0 * /usr/lib/llvm/11 11.0.0 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.9 (fallback) [3] python3.8 (fallback) [4] python2.7 (fallback) The following VMs are available for generation-2: *) AdoptOpenJDK 8.272_p10 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm The Glorious Glasgow Haskell Compilation System, version 8.8.4 timestamp(s) of HEAD at this tinderbox image: /var/db/repos/gentoo Fri Nov 20 04:05:36 AM UTC 2020 /var/db/repos/libressl Sat Nov 7 03:06:11 PM UTC 2020 emerge -qpvO sci-biology/samstat [ebuild N ] sci-biology/samstat-1.5.1
Created attachment 673633 [details] emerge-info.txt
Created attachment 673636 [details] emerge-history.txt
Created attachment 673639 [details] environment
Created attachment 673642 [details] etc.portage.tbz2
Created attachment 673645 [details] logs.tbz2
Created attachment 673648 [details] sci-biology:samstat-1.5.1:20201120-043744.log
Created attachment 673651 [details] temp.tbz2
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/proj/sci.git/commit/?id=6bc33b33b7c919869ab6c5f03854f10b8b14a030 commit 6bc33b33b7c919869ab6c5f03854f10b8b14a030 Author: Jakov Smolic <jakov.smolic@sartura.hr> AuthorDate: 2021-02-20 20:25:45 +0000 Commit: Jakov Smolic <jakov.smolic@sartura.hr> CommitDate: 2021-02-20 21:57:41 +0000 sci-biology/samstat: Port to EAPI 7 Closes: https://bugs.gentoo.org/755773 Signed-off-by: Jakov Smolic <jakov.smolic@sartura.hr> .../samstat/files/samstat-1.5.1-fno-common.patch | 31 ++++++++++++++++++++++ sci-biology/samstat/samstat-1.5.1.ebuild | 9 +++---- 2 files changed, 35 insertions(+), 5 deletions(-)